Naiman, Daniel Q.

Professor
Applied Mathematics And Statistics



Whitehead Hall 202C
(410) 516-7203
daniel.naiman@jhu.edu

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About

Education
  • Ph.D. 1982, Univ Illinois Urbana
Experience
  • 2017 - Present:  Director of Graduate Studies, WSE Applied Mathematics and Statistics
  • 2014 - Present:  Director, Financial Math Masters program
  • 2004 - 2014:  Department Chair, JHU Dept. of Applied Mathematics and Statistics
  • 2003 - 2004:  Visiting Investigator, Inherited Disease Branch of National Human Genome Research Institute, NIH
  • 1988 - 1992:  Associate Professor, JHU Department of Mathematical Sciences
  • 1982 - 1988:  Assistant Professor, JHU Department of Mathematical Sciences
Research Areas
  • Genomics
  • Geometry
  • Probability
  • Statistical genetics
  • Statistics
  • System reliability
Awards
  • 2005:  Erskine Fellow - University of Canterbury
  • 1997:  Elected Fellow of the Institute of Mathematical Statistics
  • 1977:  University Fellow - University of Illinois/Urbana

Publications

Journal Articles
  • Czarny MJ, Miller JM, Naiman DQ, Hwang CW, Hasan RK, Lemmon CC, Aversano T (2018).  Nonprimary PCI at hospitals without cardiac surgery on-site: Consistent outcomes for all?.  American Heart Journal.  197.
  • Hassoon A, Schrack J, Naiman D, Lansey D, Baig Y, Stearns V, Celentano D, Martin S, Appel L (2018).  Increasing physical activity amongst overweight and obese cancer survivors using an alexa-based intelligent agent for patient coaching: Protocol for the physical activity by technology help (path) trial.  Journal of Medical Internet Research.  20(2).
  • Goodman M, Naiman DQ, LaKind JS (2018).  Systematic review of the literature on triclosan and health outcomes in humans.  Critical Reviews in Toxicology.  48(1).
  • LaKind JS, Burns CJ, Naiman DQ, O’Mahony C, Vilone G, Burns AJ, Naiman JS (2017).  Critical and systematic evaluation of data for estimating human exposures to 2,4-dichlorophenoxyacetic acid (2,4-D)–quality and generalizability.  Journal of Toxicology and Environmental Health - Part B: Critical Reviews.  20(8).
  • Czarny MJ, Hwang CW, Naiman DQ, Lemmon CC, Hasan RK, Wang T, Aversano T (2017).  Heparin versus bivalirudin for non-primary percutaneous coronary intervention: A post-Hoc analysis of the CPORT-E trial.  Catheterization and Cardiovascular Interventions.  90(3).
  • Triphan T, Nern A, Roberts SF, Korff W, Naiman DQ, Strauss R (2016).  A screen for constituents of motor control and decision making in Drosophila reveals visual distance-estimation neurons.  Scientific Reports.  6.
  • Pugliese CE, Anthony LG, Strang JF, Dudley K, Wallace GL, Naiman DQ, Kenworthy L (2016).  Longitudinal Examination of Adaptive Behavior in Autism Spectrum Disorders: Influence of Executive Function.  Journal of Autism and Developmental Disorders.  46(2).
  • LaKind JS, Naiman DQ (2015).  Temporal trends in bisphenol A exposure in the United States from 2003-2012 and factors associated with BPA exposure: Spot samples and urine dilution complicate data interpretation.  Environmental Research.  142.
  • Niknafs N, Beleva-Guthrie V, Naiman D, Karchin R (2015).  SubClonal Hierarchy Inference from Somatic Mutations: Automatic Reconstruction of Cancer Evolutionary Trees from Multi-region Next Generation Sequencing.  PLoS Comput Biol.  11(10).  e1004416.
  • LaKind JS, Naiman D (2015).  Temporal trends in bisphenol A exposure in the United States from 2003-2012 and factors associated with BPA exposure: Spot samples and urine dilution complicate data interpretation.  Environmental Research.  142.  84-95.
  • Niknafs N, Beleva-Guthrie V, Naiman DQ, Karchin R (2015).  SubClonal Hierarchy Inference from Somatic Mutations: Automatic Reconstruction of Cancer Evolutionary Trees from Multi-region Next Generation Sequencing.  PLoS Computational Biology.  11(10).
  • Tosto MG, Petrill SA, Halberda J, Trzaskowski M, Tikhomirova TN, Bogdanova OY, Ly R, Wilmer JB, Naiman DQ, Germine L, Plomin R, Kovas Y (2014).  Why do we differ in number sense? Evidence from a genetically sensitive investigation.  Intelligence.  43(1).
  • Tosto MG, Petrill SA, Halberda J, Trzaskowski M, Tikhomirova TN, Bogdanova OY, Ly R, Wilmer JB, Naiman D, Germine L, Plomin R, Kovas Y (2014).  Why do we differ in number sense? Evidence from a genetically sensitive investigation.  Intelligence.  43(0).  35-46.
  • Cope L, Naiman D, Parmigiani G (2014).  Integrative correlation: Properties and relation to canonical correlations.  Journal of Multivariate Analysis.  123.  270-280.
  • Yang S, Naiman DQ (2014).  Multiclass cancer classification based on gene expression comparison.  Statistical Applications in Genetics and Molecular Biology.  13(4).
  • Cope L, Naiman DQ, Parmigiani G (2014).  Integrative correlation: Properties and relation to canonical correlations.  Journal of Multivariate Analysis.  123.
  • Kenworthy L, Anthony LG, Naiman DQ, Cannon L, Wills MC, Luong-Tran C, Werner MA, Alexander KC, Strang J, Bal E, Sokoloff JL, Wallace GL (2014).  Randomized controlled effectiveness trial of executive function intervention for children on the autism spectrum.  Journal of Child Psychology and Psychiatry and Allied Disciplines.  55(4).
  • Marchitti SA, Lakind JS, Naiman DQ, Berlin CM, Kenneke JF (2013).  Improving infant exposure and health risk estimates: Using serum data to predict polybrominated diphenyl ether concentrations in breast milk.  Environmental Science and Technology.  47(9).
  • Marchitti SA, LaKind JS, Naiman D, Berlin CM, Kenneke JF (2013).  Improving Infant Exposure and Health Risk Estimates: Using Serum Data to Predict Polybrominated Diphenyl Ether Concentrations in Breast Milk.  Environmental Science & Technology.  47(9).  4787-4795.
  • LaKind JS, Goodman M, Naiman DQ (2012).  Use of NHANES Data to Link Chemical Exposures to Chronic Diseases: A Cautionary Tale.  PLoS ONE.  7(12).
  • Halberda J, Ly R, Wilmer JB, Naiman DQ, Germine L (2012).  Number sense across the lifespan as revealed by a massive Internet-based sample.  Proceedings of the National Academy of Sciences of the United States of America.  109(28).
  • Lakind JS, Levesque J, Dumas P, Bryan S, Clarke J, Naiman DQ (2012).  Comparing united states and canadian population exposures from national biomonitoring surveys: Bisphenol a intake as a case study.  Journal of Exposure Science and Environmental Epidemiology.  22(3).
  • Lecover R, Williams N, Markovic N, Reich DH, Naiman DQ, Katz HE (2012).  Next-generation polymer solar cell materials: Designed control of interfacial variables.  ACS Nano.  6(4).
  • LaKind JS, Levesque J, Dumas P, Bryan S, Clarke J, Naiman D (2012).  Comparing United States and Canadian population exposures from National Biomonitoring Surveys: Bisphenol A intake as a case study.  Journal of Exposure Science and Environmental Epidemiology.  22(3).  219-226.
  • LaKind JS, Goodman M, Naiman D (2012).  Use of NHANES Data to Link Chemical Exposures to Chronic Diseases: A Cautionary Tale.  Plos One.  7(12).
  • Lecover R, Williams N, Markovic N, Reich D, Naiman D, Katz H (2012).  Next-Generation Polymer Solar Cell Materials: Designed Control of Interfacial Variables.  Acs Nano.  6(4).  2865-2870.
  • Halberda J, Ly R, Wilmer JB, Naiman D, Germine L (2012).  Number sense across the lifespan as revealed by a massive Internet-based sample.  Proceedings of the National Academy of Sciences of the United States of America.  109(28).  11116-11120.
  • Martin DC, Kim H, Mackin NA, Maldonado-Báez L, Evangelista CC, Beaudry VG, Dudgeon DD, Naiman DQ, Erdman SE, Cunningham KW (2011).  New regulators of a high affinity Ca2+influx system revealed through a genome-wide screen in yeast.  Journal of Biological Chemistry.  286(12).
  • Lakind JS, Naiman D (2011).  Daily intake of bisphenol A and potential sources of exposure: 2005-2006 National Health and Nutrition Examination Survey.  Journal of Exposure Science and Environmental Epidemiology.  21(3).  272-279.
  • Lakind JS, Naiman DQ (2011).  Daily intake of bisphenol A and potential sources of exposure: 2005-2006 National Health and Nutrition Examination Survey.  Journal of Exposure Science and Environmental Epidemiology.  21(3).
  • Martin DC, Kim H, Mackin NA, Maldonado-Baez L, Evangelista CC, Beaudry VG, Dudgeon DD, Naiman D, Erdman SE, Cunningham K (2011).  New Regulators of a High Affinity Ca2+ Influx System Revealed through a Genome-wide Screen in Yeast.  Journal of Biological Chemistry.  286(12).  10744-10754.
  • LaKind JS, Naiman DQ, Hays SM, Aylward LL, Blount BC (2010).  Public health interpretation of trihalomethane blood levels in the United States: NHANES 1999-2004.  Journal of Exposure Science and Environmental Epidemiology.  20(3).
  • Lakind JS, Naiman D, Hays SM, Aylward LL, Blount BC (2010).  Public health interpretation of trihalomethane blood levels in the United States: NHANES 1999-2004.  Journal of Exposure Science and Environmental Epidemiology.  20(3).  255-262.
  • Feng J, Naiman DQ, Cooper B (2009).  Coding DNA repeated throughout intergenic regions of the Arabidopsis thaliana genome: Evolutionary footprints of RNA silencing.  Molecular BioSystems.  5(12).
  • Feng J, Garrett WM, Naiman DQ, Cooper B (2009).  Correlation of multiple peptide mass spectra for phosphoprotein identification.  Journal of Proteome Research.  8(11).
  • LaKind JS, Berlin CM, Sjödin A, Turner W, Wang RY, Needham LL, Paul IM, Stokes JL, Naiman DQ, Patterson DG (2009).  Do human milk concentrations of persistent organic chemicals really decline during lactation? Chemical concentrations during lactation and milk/serum partitioning.  Environmental Health Perspectives.  117(10).
  • Lin X, Afsari B, Marchionni L, Cope L, Parmigiani G, Naiman D, Geman D (2009).  The ordering of expression among a few genes can provide simple cancer biomarkers and signal BRCA1 mutations.  BMC Bioinformatics.  10.
  • Lakind JS, Hays SM, Aylward LL, Naiman DQ (2009).  Perspective on serum dioxin levels in the United States: An evaluation of the NHANES data.  Journal of Exposure Science and Environmental Epidemiology.  19(4).
  • Feng J, Naiman D, Cooper B (2009).  Coding DNA repeated throughout intergenic regions of the Arabidopsis thaliana genome: evolutionary footprints of RNA silencing.  Molecular Biosystems.  5(12).  1679-1687.
  • Lin X, Afsari B, Marchionni L, Cope L, Parmigiani G, Naiman D, Geman D (2009).  The ordering of expression among a few genes can provide simple cancer biomarkers and signal BRCA1 mutations.  BMC bioinformatics.  10(1).  256.
  • LaKind JS, Berlin CM, Sjodin A, Turner W, Wang R, Needham LL, Paul IM, Stokes JL, Naiman D, Patterson DG (2009).  Do Human Milk Concentrations of Persistent Organic Chemicals Really Decline During Lactation? Chemical Concentrations During Lactation and Milk/Serum Partitioning.  Environmental Health Perspectives.  117(10).  1625-1631.
  • Lee J, Feng J, Campbell KB, Scheffler BE, Garrett WM, Thibivilliers S, Stacey G, Naiman D, Tucker ML, Pastor-Corrales MA, Cooper B (2009).  Quantitative Proteomic Analysis of Bean Plants Infected by a Virulent and Avirulent Obligate Rust Fungus.  Molecular & Cellular Proteomics.  8(1).  19-31.
  • Lee J, Feng J, Campbell KB, Scheffler BE, Garrett WM, Thibivilliers S, Stacey G, Naiman DQ, Tucker ML, Pastor-Corrales MA, Cooper B (2009).  Quantitative proteomic analysis of bean plants infected by a virulent and avirulent obligate rust fungus.  Molecular and Cellular Proteomics.  8(1).
  • Lakind JS, Hays SM, Aylward LL, Naiman D (2009).  Perspective on serum dioxin levels in the United States: an evaluation of the NHANES data.  Journal of Exposure Science and Environmental Epidemiology.  19(4).  435-441.
  • Feng J, Garrett WM, Naiman D, Cooper B (2009).  Correlation of Multiple Peptide Mass Spectra for Phosphoprotein Identification.  Journal of Proteome Research.  8(11).  5396-5405.
  • Geman D, Afsari B, Tan AC, Naiman DQ (2008).  Microarray classification from several twogene expression comparisons.  Proceedings - 7th International Conference on Machine Learning and Applications, ICMLA 2008.
  • LaKind JS, Naiman DQ (2008).  Bisphenol A (BPA) daily intakes in the United States: Estimates from the 2003-2004 NHANES urinary BPA data.  Journal of Exposure Science and Environmental Epidemiology.  18(6).
  • LaKind JS, Berlin CM, Stokes JL, Naiman DQ, Paul IM, Patterson DG, Jones RS, Niehuser S, Wang RY, Needham LL, Lorber MN, Sjodin A (2008).  Lifestyle and polybrominated diphenyl ethers in human milk in the United States: A pilot study.  Toxicological and Environmental Chemistry.  90(6).
  • Song W, Juhn FS, Naiman DQ, Konstantinidis KT, Gardner TS, Ward MJ (2008).  Predicting σ28 promoters in eleven Shewanella genomes.  FEMS Microbiology Letters.  283(2).
  • Feng J, Naiman DQ, Cooper B (2008).  Combined dynamic arrays for storing and searching semi-ordered tandem mass spectrometry data.  Journal of Computational Biology.  15(4).
  • Uhl GR, Drgon T, Johnson C, Li C, Contoreggi C, Hess J, Naiman D, Liu QR (2008).  Molecular Genetics of Addiction and Related Heritable Phenotypes Genome-Wide Association Approaches Identify "Connectivity Constellation" and Drug Target Genes with Pleiotropic Effects.  Addiction Reviews 2008.  1141.  318-381.
  • Song W, Juhn FS, Naiman D, Konstantinidis KT, Gardner TS, Ward MJ (2008).  Predicting sigma(28) promoters in eleven Shewanella genomes.  Fems Microbiology Letters.  283(2).  223-230.
  • Lakind JS, Naiman D (2008).  Bisphenol A (BPA) daily intakes in the United States: Estimates from the 2003-2004 NHANES urinary BPA data.  Journal of Exposure Science and Environmental Epidemiology.  18(6).  608-615.
  • Geman D, Afsari B, Tan AC, Naiman D (2008).  Microarray classification from several two-gene expression comparisons.  Seventh International Conference on Machine Learning and Applications, Proceedings.  583-585.
  • Feng J, Naiman D, Cooper B (2008).  Combined dynamic arrays for storing and searching semi-ordered tandem mass spectrometry data.  Journal of Computational Biology.  15(4).  457-468.
  • Uhl GR, Drgon T, Johnson C, Li CY, Contoreggi C, Hess J, Naiman D, Liu QR (2008).  Molecular genetics of addiction and related heritable phenotypes: Genome-wide association approaches identify "connectivity constellation" and drug target genes with pleiotropic effects.  Annals of the New York Academy of Sciences.  1141.
  • Feng J, Naiman DQ, Cooper B (2007).  Probability-based pattern recognition and statistical framework for randomization: Modeling tandem mass spectrum/peptide sequence false match frequencies.  Bioinformatics.  23(17).
  • Song W, Maiste PJ, Naiman DQ, Ward MJ (2007).  Sigma 28 promoter prediction in members of the Gammaproteobacteria.  FEMS Microbiology Letters.  271(2).
  • Feng J, Naiman DQ, Cooper B (2007).  Probability model for assessing proteins assembled from peptide sequences inferred from tandem mass spectrometry data.  Analytical Chemistry.  79(10).
  • Needham LL, Naiman DQ, Patterson DG, LaKind JS (2007).  Assigning concentration values for dioxin and furan congeners in human serum when measurements are below limits of detection: An observational approach.  Chemosphere.  67(3).
  • Feng J, Naiman D, Cooper B (2007).  Probability-based pattern recognition and statistical framework for randomization: modeling tandem mass spectrum/peptide sequence false match frequencies.  Bioinformatics.  23(17).  2210-2217.
  • Needham LL, Naiman D, Patterson DG, LaKind JS (2007).  Assigning concentration values for dioxin and furan congeners in human serum when measurements are below limits of detection: An observational approach.  Chemosphere.  67(3).  439-447.
  • Feng J, Naiman D, Cooper B (2007).  Probability model for assessing proteins assembled from peptide sequences inferred from tandem mass spectrometry data.  Analytical Chemistry.  79(10).  3901-3911.
  • Song WJ, Maiste PJ, Naiman D, Ward MJ (2007).  Sigma 28 promoter prediction in members of the Gammaproteobacteria.  Fems Microbiology Letters.  271(2).  222-229.
  • Naiman DQ (2006).  [16] Random Data Set Generation to Support Microarray Analysis.  Methods in Enzymology.  411.
  • Tosun D, Rettmann ME, Naiman DQ, Resnick SM, Kraut MA, Prince JL (2006).  Cortical reconstruction using implicit surface evolution: Accuracy and precision analysis.  NeuroImage.  29(3).
  • Naiman D (2006).  Random data set generation to support microarray analysis.  DNA Microarrays, Part B: Databases and Statistics.  411.  312-325.
  • Tosun D, Rettmann ME, Naiman D, Resnick SM, Kraut MA, Prince J (2006).  Cortical reconstruction using implicit surface evolution: accuracyand precision analysis.  NeuroImage.  29(3).  838-852.
  • Baier-Anderson C, Blount BC, LaKind JS, Naiman D, Wilbur SB, Tan S (2006).  Estimates of exposures to perchlorate from consumption of human milk, dairy milk, and water, and comparison to current reference dose.  Journal of Toxicology and Environmental Health-Part a-Current Issues.  69(4).  319-330.
  • Baier-Anderson C, Blount BC, LaKind JS, Naiman DQ, Wilbur SB, Tan S (2006).  Estimates of exposures to perchlorate from consumption of human milk, dairy milk, and water, and comparison to current reference dose.  Journal of Toxicology and Environmental Health - Part A.  69(4).
  • Naiman DQ, Wynn HP (2005).  The algebra of Bonferroni bounds: Discrete tubes and extensions.  Metrika.  62(2-3).
  • Tan AC, Naiman DQ, Xu L, Winslow RL, Geman D (2005).  Simple decision rules for classifying human cancers from gene expression profiles.  Bioinformatics.  21(20).
  • Xu L, Tan AC, Naiman DQ, Geman D, Winslow RL (2005).  Robust prostate cancer marker genes emerge from direct integration of inter-study microarray data.  Bioinformatics.  21(20).
  • Dominici F, Cope L, Naiman DQ, Zeger SL (2005).  Smooth quantile ratio estimation.  Biometrika.  92(3).
  • Wu X, Naiman DQ (2005).  p-Value simulation for affected sib pair multiple testing.  Human Heredity.  59(4).
  • Anthony LG, Anthony BJ, Glanville DN, Naiman DQ, Waanders C, Shatter S (2005).  The relationships between parenting stress, parenting behaviour and preschoolers' social competence and behaviour problems in the classroom.  Infant and Child Development.  14(2).
  • Wu XL, Naiman D (2005).  p-Value simulation for affected sib pair multiple testing.  Human Heredity.  59(4).  190-200.
  • Tan AC, Naiman D, Xu L, Winslow RL, Geman D (2005).  Simple decision rules for classifying human cancers from gene expression profiles.  Bioinformatics.  21(20).  3896-3904.
  • Anthony LG, Anthony BJ, Glanville DN, Naiman D, Waanders C, Shaffer S (2005).  The relationships between parenting stress, parenting behaviour and preschoolers' social competence and behaviour problems in the classroom.  Infant and Child Development.  14(2).  133-154.
  • Dominici F, Cope L, Naiman D, Zeger S (2005).  Smooth quantile ratio estimation.  Biometrika.  92(3).  543-557.
  • Xu L, Tan AC, Naiman D, Geman D, Winslow RL (2005).  Robust prostate cancer marker genes emerge from direct integration of inter-study microarray data.  Bioinformatics.  21(20).  3905-3911.
  • Naiman D, Wynn HP (2005).  The algebra of Bonferroni bounds: discrete tubes and extensions.  Metrika.  62(2-3).  139-147.
  • Tosun D, Rettmann ME, Naiman DQ, Resnick SM, Kraut MA, Prince JL (2004).  Cortical reconstruction using implicit surface evolution: A landmark validation study.  Lecture Notes in Computer Science.  3216(PART 1).
  • Geman D, D'Avignon C, Naiman DQ, Winslow RL (2004).  Classifying gene expression profiles from pairwise mRNA comparisons.  Statistical Applications in Genetics and Molecular Biology.  3(1).
  • Parisi M, Nuttall R, Edwards P, Minor J, Naiman D, Lü J, Doctolero M, Vainer M, Chan C, Malley J, Eastman S, Oliver B (2004).  A survey of ovary-, testis-, and soma-biased gene expression in Drosophila melanogaster adults..  Genome biology.  5(6).
  • Wilson WS, Naiman DQ (2004).  K-12 calculator usage and college grades.  Educational Studies in Mathematics.  56(1).
  • Naiman DQ (2004).  Statistical anomaly detection via httpd data analysis.  Computational Statistics and Data Analysis.  45(1).
  • Geman D, d’Avignon C, Naiman D, Winslow RL (2004).  Classifying gene expression profiles from pairwise mRNA comparisons.  Statistical applications in genetics and molecular biology.  3(1).
  • Naiman D (2004).  Statistical anomaly detection via httpd data analysis.  Computational Statistics & Data Analysis.  45(1).  51-67.
  • Parisi M, Nuttall R, Edwards P, Minor J, Naiman D, Lu JN, Doctolero M, Vainer M, Chan C, Malley J, Eastman S, Oliver B (2004).  A survey of ovary-, testis-, and soma-biased gene expression in Drosophila melanogaster adults.  Genome Biology.  5(6).
  • Geman D, d’Avignon C, Naiman D, Winslow R, Zeboulon A (2004).  Gene expression comparisons for class prediction in cancer studies.  Proceedings 36'th Symposium on the Interface: Computing Science and Statistics.
  • Klein AP, Kovac I, Sorant AJM, Baffoe-Bonnie A, Doan BQ, Ibay G, Lockwood E, Mandal D, Santhosh L, Weissbecker K, Woo J, Zambelli-Weiner A, Zhang J, Naiman DQ, Malley J, Bailey-Wilson JE (2003).  Importance sampling method of correction for multiple testing in affected sib-pair linkage analysis..  BMC genetics.  4 Suppl 1.
  • Parisi M, Nuttall R, Naiman D, Bouffard G, Malley J, Andrews J, Eastman S, Oliver B (2003).  Paucity of genes on the Drosophila X chromosome showing male-biased expression.  Science.  299(5607).
  • Parisi M, Nuttall R, Naiman D, Bouffard G, Malley J, Andrews J, Eastman S, Oliver B (2003).  Paucity of genes on the Drosophila X chromosome showing male-biased expression.  Science.  299(5607).  697-700.
  • Klein AP, Kovac I, Sorant AJ, Baffoe-Bonnie A, Doan BQ, Ibay G, Lockwood E, Mandal D, Santhosh L, Weissbecker K, Woo J, Zambelli-Weiner A, Zhang J, Naiman D, Malley J, Bailey-Wilson JE (2003).  Importance sampling method of correction for multiple testing in affected sib-pair linkage analysis.  Bmc Genetics.  4.
  • Parisi MJ, Nuttall R, Lu JN, Chan C, Vainer M, Minor J, Lash A, Eastman S, Malley J, Naiman D, Oliver B (2003).  Microarray analysis of sexual dimorphism in Drosophila..  Developmental Biology.  259(2).  528-528.
  • Malley JD, Naiman DQ, Bailey-Wilson JE (2002).  A comprehensive method for genome scans.  Human Heredity.  54(4).
  • Giglio B, Naiman DQ, Wynn HP (2002).  Gröbner bases, abstract tubes, and inclusion-exclusion reliability bounds.  IEEE Transactions on Reliability.  51(3).
  • Suzuki T, Shen H, Akagi K, Morse HC, Malley JD, Naiman DQ, Jenkins NA, Copeland NG (2002).  New genes involved in cancer identified by retroviral tagging.  Nature Genetics.  32(1).
  • Uhl GR, Liu QR, Naiman D (2002).  Substance abuse vulnerability loci: Converging genome scanning data.  Trends in Genetics.  18(8).
  • Giglio B, Naiman D, Wynn HP (2002).  Grobner bases, abstract tubes, and inclusion-exclusion reliability bounds.  Ieee Transactions on Reliability.  51(3).  358-366.
  • Uhl GR, Liu QR, Naiman D (2002).  Substance abuse vulnerability loci: converging genome scanning data.  Trends in Genetics.  18(8).  420-425.
  • Suzuki T, Shen HF, Akagi K, Morse HC, Malley JD, Naiman D, Jenkins NA, Copeland NG (2002).  New genes involved in cancer identified by retroviral tagging.  Nature Genetics.  32(1).  166-174.
  • Malley JD, Naiman D, Bailey-Wilson JE (2002).  A comprehensive method for genome scans.  Human Heredity.  54(4).  174-185.
  • Naiman D, Priebe C (2001).  Computing Scan Statistic p Values Using Importance Sampling, with Applications to Genetics and Medical Image Analysis.  Journal of Computational and Graphical Statistics.  10(2).  296-328.
  • LaKind JS, Berlin CM, Naiman DQ (2001).  Infant exposure to chemicals in breast milk in the United States: What we need to learn from a breast milk monitoring program.  Environmental Health Perspectives.  109(1).
  • LaKind JS, Berlin CM, Naiman D (2001).  Infant exposure to chemicals in breast milk in the United States: What we need to learn from a breast milk monitoring program.  Environmental Health Perspectives.  109(1).  75-88.
  • Naiman DQ, Priebe CE (2001).  computing scan statistic p values using importance sampling, with applications to genetics and medical image analysis.  Journal of Computational and Graphical Statistics.  10(2).
  • Priebe C, Naiman D, Cope LM (2001).  Importance sampling for spatial scan analysis: computing scan statistic p-values for marked point processes.  Computational Statistics and Data Analysis.  35(4).  475-485.
  • Uhl GR, Liu QR, Walther D, Hess J, Naiman D (2001).  Polysubstance abuse-vulnerability genes: Genome scans for association, using 1,004 subjects and 1,494 single-nucleotide polymorphisms.  American Journal of Human Genetics.  69(6).
  • Uhl GR, Liu QR, Walther D, Hess J, Naiman D (2001).  Polysubstance abuse-vulnerability genes: Genome scans for association, using 1,004 subjects and 1,494 single-nucleotide polymorphisms.  American Journal of Human Genetics.  69(6).  1290-1300.
  • Priebe CE, Naiman DQ, Cope LM (2001).  Importance sampling for spatial scan analysis: Computing scan statistic p-values for marked point processes.  Computational Statistics and Data Analysis.  35(4).
  • LaKind JS, Berlin CM, Park CN, Naiman DQ, Gudka NJ (2000).  Methodology for characterizing distributions of incremental body burdens of 2,3,7,8-tcdd and dde from breast milk in north american nursing infants.  Journal of Toxicology and Environmental Health - Part A.  59(8).
  • LaKind JS, Berlin CM, Park CN, Naiman D, Gudka NJ (2000).  Methodology for characterizing distributions of incremental body burdens of 2,3,7,8-TCDD and DDE from breast milk in North American nursing infants.  Journal of Toxicology and Environmental Health-Part A.  59(8).  605-639.
  • LaKind JS, Graves CG, Ginevan ME, Jenkins RA, Naiman DQ, Tardiff RG (1999).  Exposure to environmental tobacco smoke in the workplace and the impact of away-from-work exposure.  Risk Analysis.  19(3).
  • Lakind JS, Ginevan ME, Naiman DQ, James AC, Jenkins RA, Dourson ML, Felter SP, Graves CG, Tardiff RG (1999).  Distribution of exposure concentrations and doses for constituents of environmental tobacco smoke.  Risk Analysis.  19(3).
  • Lakind JS, Jenkins RA, Naiman DQ, Ginevan ME, Graves CG, Tardiff RG (1999).  Use of environmental tobacco smoke constituents as markers for exposure.  Risk Analysis.  19(3).
  • Schwartz SS, Naiman DQ (1999).  Bias and variance of planning level estimates of pollutant loads.  Water Resources Research.  35(11).
  • Naiman D, Schwartz SS (1999).  Bias and variance of planning level estimates of pollutant loads.  Water Resources Research.  35(11).  3475-3487.
  • Kleinman NL, Naiman D, Spall JC (1999).  Simulation-based optimization with stochastic approximation using common random numbers.  Management Science.  45(11).  1570-1578.
  • Ginevan ME, Graves CG, Jenkins RA, LaKind JS, Naiman D, Tardiff RG (1999).  Exposure to environmental tobacco smoke in the workplace and the impact of away-from-work exposure.  Risk Analysis.  19(3).  349-358.
  • Dourson ML, Felter SP, Ginevan ME, Graves CG, James AC, Jenkins RA, LaKind JS, Naiman D, Tardiff RG (1999).  Distribution of exposure concentrations and doses for constituents of environmental tobacco smoke.  Risk Analysis.  19(3).  375-390.
  • Ginevan ME, Graves CG, Jenkins RA, LaKind JS, Naiman D, Tardiff RG (1999).  Use of environmental tobacco smoke constituents as markers for exposure.  Risk Analysis.  19(3).  359-373.
  • Kleinman NL, Spall JC, Naiman DQ (1999).  Simulation-based optimization with stochastic approximation using common random numbers.  Management Science.  45(11).
  • Naiman DQ, Stone RE (1998).  A homological characterization of Q-matrices.  Mathematics of Operations Research.  23(2).
  • Naiman D, Stone RE (1998).  A homological characterization of Q-matrices.  Mathematics of Operations Research.  23(2).  463-478.
  • Naiman DQ, Wynn HP (1997).  Abstract tubes, improved inclusion-exclusion identities and inequalities and importance sampling.  Annals of Statistics.  25(5).
  • Wenz JF, Hauser DL, Scott WW, Robertson DD, Tsapakos MJ, Kearney DK, Bluemke DA, Naiman DO, Brooker AF, Chao EYS (1997).  Observer variation in the detection of acetabular bone deficiencies.  Skeletal Radiology.  26(5).
  • Naiman DQ, Wynn HP (1997).  On intersecting a point set with Euclidean balls.  Computational Geometry: Theory and Applications.  7(4).
  • Naiman D, Wynn HP (1997).  Abstract tubes, improved inclusion-exclusion identities and inequalities and importance sampling.  Annals of Statistics.  25(5).  1954-1983.
  • Naiman D, Wynn HP (1997).  On intersecting a point set with Euclidean balls.  Computational Geometry-Theory and Applications.  7(4).  237-244.
  • Naiman DQ, Wynn HP (1996).  Independence number and the complexity of families of sets.  Discrete Mathematics.  154(1-3).
  • Lee D, Naiman D (1996).  A hybrid estimator for the cumulative probability of detection of surveillance radars.  Ieee Transactions on Aerospace and Electronic Systems.  32(1).  476-480.
  • Naiman D, Wynn HP (1996).  Independence number and the complexity of families of sets.  Discrete Mathematics.  154(1-3).  203-216.
  • Chan O, Naiman D (1995).  Some Simple U-Statistic Tests for Uniformity on Certain Homogeneous Spaces.  Journal of Multivariate Analysis.  54(2).  210-226.
  • Chan O, Naiman DQ (1995).  Some simple U-statistic tests for uniformity on certain homogeneous spaces.  Journal of Multivariate Analysis.  54(2).
  • Aronov B, Naiman DQ, Pach J, Sharir M (1993).  An invariant property of balls in arrangements of hyperplanes.  Discrete & Computational Geometry.  10(1).
  • Naiman DQ, Wynn HP (1993).  Independent collections of translates of boxes and a conjecture due to Grünbaum.  Discrete & Computational Geometry.  9(1).
  • Naiman DQ, Wynn HP (1993).  A theorem on independence.  Discrete Mathematics.  120(1-3).
  • Naiman D, Wynn HP (1993).  Independent Collections of Translates of Boxes and a Conjecture Due to Grunbaum.  Discrete & Computational Geometry.  9(1).  101-105.
  • Aronov B, Naiman D, Pach J, Sharir M (1993).  An Invariant Property of Balls in Arrangements of Hyperplanes.  Discrete & Computational Geometry.  10(4).  421-425.
  • Naiman D, Wynn HP (1993).  A Theorem on Independence.  Discrete Mathematics.  120(1-3).  287-289.
  • Naiman D, Wynn HP (1992).  Inclusion-Exclusion-Bonferroni Identities and Inequalities for Discrete Tube-Like Problems Via Euler Characteristics.  Annals of Statistics.  20(1).  43-76.
  • Naiman D (1991).  On the Problem of Interactions in the Analysis of Variance - Comment.  Journal of the American Statistical Association.  86(414).  369-372.
  • Naiman D (1990).  Volumes of Tubular-Neighborhoods of Spherical Polyhedra and Statistical-Inference.  Annals of Statistics.  18(2).  685-716.
  • Casman EA, Chamberlin CE, Naiman D (1988).  Confronting the Ironies of Optimal-Design - Nonoptimal Sampling Designs with Desirable Properties.  Water Resources Research.  24(3).  409-415.
  • Naiman D (1987).  Simultaneous Confidence-Bounds in Multiple-Regression Using Predictor Variable Constraints.  Journal of the American Statistical Association.  82(397).  214-219.
  • Naiman D (1987).  Characterization of Risk Sets for Simple Versus Simple Hypothesis-Testing.  American Statistician.  41(3).  218-220.
  • Naiman D (1987).  Minimax Regret Simultaneous Confidence Bands for Multiple-Regression Functions.  Journal of the American Statistical Association.  82(399).  894-901.
  • Naiman DQ (1987).  Simultaneous confidence bounds in multiple regression using predictor variable constraints.  Journal of the American Statistical Association.  82(397).
  • Naiman DQ (1987).  Characterization of risk sets for simple versus simple hypothesis testing.  American Statistician.  41(3).
  • Naiman DQ (1987).  Minimax regret simultaneous confidence bands for multiple regression functions.  Journal of the American Statistical Association.  82(399).
  • Naiman D (1986).  Conservative Confidence Bands in Curvilinear Regression.  Annals of Statistics.  14(3).  896-906.
  • Naiman D (1984).  Average Width Optimality of Simultaneous Confidence-Bounds.  Annals of Statistics.  12(4).  1199-1214.
  • Naiman D (1984).  Optimal Simultaneous Confidence-Bounds.  Annals of Statistics.  12(2).  702-715.
  • Naiman D (1983).  Comparing Scheffe-Type to Constant-Width Confidence-Bounds in Regression.  Journal of the American Statistical Association.  78(384).  906-912.
  • Naiman DQ (1983).  Comparing Scheffé-type to constant-width confidence bounds in regression.  Journal of the American Statistical Association.  78(384).
Book Chapters
  • Tosun D, Rettmann ME, Naiman D, Resnick SM, Kraut MA, Prince J (2004).  Cortical reconstruction using implicit surface evolution: a landmarkvalidation study.  Medical Image Computing and Computer-Assisted Intervention-MICCAI2004.  Springer Berlin Heidelberg.  384-392.
Other Publications
  • Donohue M, Jin G, Loehe JR, Naiman D (1990).  Statistically designed study of the variables and parameters of carbon dioxide equations of state.  Johns Hopkins Univ., Baltimore, MD (USA).
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