Stayman, Joseph

Assistant Professor
Som Biomedical EngineeringBME Profile

Traylor 605B
(410) 955-1314
web.stayman@jhu.edu

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About

Education
  • Ph.D. 2003, Univ of Michigan Ann Arbor*
  • Master of Science 1998, Univ of Michigan Ann Arbor*
  • Bachelor of Science 1995, Rensselaer Polytechnic Institute
Experience
  • 2013 - 2014:  Joint, SOM Biomedical Engineering

Publications

Journal Articles
  • Jacobson MW, Ketcha MD, Capostagno S, Martin A, Uneri A, Goerres J, De Silva T, Reaungamornrat S, Han R, Manbachi A, Stayman JW, Vogt S, Kleinszig G, Siewerdsen JH (2018).  A line fiducial method for geometric calibration of cone-beam CT systems with diverse scan trajectories.  Physics in Medicine and Biology.  63(2).
  • Gang GJ, Siewerdsen JH, Stayman JW (2017).  Task-Driven Optimization of Fluence Field and Regularization for Model-Based Iterative Reconstruction in Computed Tomography.  IEEE transactions on medical imaging.  36(12).
  • Tilley S, Jacobson M, Cao Q, Brehler M, Sisniega A, Zbijewski W, Stayman JW (2017).  Penalized-Likelihood Reconstruction with High-Fidelity Measurement Models for High-Resolution Cone-Beam Imaging.  IEEE Transactions on Medical Imaging.  (4).
  • Ouadah S, Jacobson M, Stayman JW, Ehtiati T, Weiss C, Siewerdsen JH (2017).  Correction of patient motion in cone-beam CT using 3D-2D registration.  Physics in Medicine and Biology.  62(23).
  • Dang H, Stayman JW, Xu J, Zbijewski W, Sisniega A, Mow M, Wang X, Foos DH, Aygun N, Koliatsos VE, Siewerdsen JH (2017).  Task-based statistical image reconstruction for high-quality cone-beam CT.  Physics in Medicine and Biology.  62(22).
  • Contijoch F, Stayman JW, McVeigh ER (2017).  The impact of small motion on the visualization of coronary vessels and lesions in cardiac CT: A simulation study: A.  Medical Physics.  44(7).
  • Gang GJ, Siewerdsen JH, Webster Stayman J (2017).  Task-driven optimization of CT tube current modulation and regularization in model-based iterative reconstruction.  Physics in Medicine and Biology.  62(12).
  • Sisniega A, Stayman JW, Yorkston J, Siewerdsen JH, Zbijewski W (2017).  Motion compensation in extremity cone-beam CT using a penalized image sharpness criterion.  Physics in Medicine and Biology.  62(9).
  • Xu S, Uneri A, Khanna AJ, Siewerdsen JH, Stayman JW (2017).  Polyenergetic known-component CT reconstruction with unknown material compositions and unknown x-ray spectra.  Physics in Medicine and Biology.  62(8).
  • Dang H, Stayman JW, Sisniega A, Zbijewski W, Xu J, Wang X, Foos DH, Aygun N, Koliatsos VE, Siewerdsen JH (2017).  Multi-resolution statistical image reconstruction for mitigation of truncation effects: Application to cone-beam CT of the head.  Physics in Medicine and Biology.  62(2).
  • Ouadah S, Jacobson M, Stayman JW, Ehtiati T, Weiss C, Siewerdsen JH (2017).  Task-driven orbit design and implementation on a robotic C-arm system for cone-beam CT.  Progress in Biomedical Optics and Imaging - Proceedings of SPIE.  10132.
  • Cao Q, Brehler M, Sisniega A, Stayman JW, Yorkston J, Siewerdsen JH, Zbijewski W (2017).  High-resolution extremity cone-beam CT with a CMOS detector: Task-based optimization of scintillator thickness.  Progress in Biomedical Optics and Imaging - Proceedings of SPIE.  10132.
  • Zhang H, Gang GJ, Lee J, Wong J, Stayman JW (2017).  Integration of prior CT into CBCT reconstruction for improved image quality via reconstruction of difference: First patient studies.  Progress in Biomedical Optics and Imaging - Proceedings of SPIE.  10132.
  • Gang GJ, Siewerdsen JH, Stayman JW (2017).  Joint optimization of fluence field modulation and regularization in task-driven computed tomography.  Progress in Biomedical Optics and Imaging - Proceedings of SPIE.  10132.
  • Zhang X, Tilley S, Xu S, Mathews A, McVeigh ER, Stayman JW (2017).  Deformable known component model-based reconstruction for coronary CT angiography.  Progress in Biomedical Optics and Imaging - Proceedings of SPIE.  10132.
  • Cao Q, Sisniega A, Brehler M, Stayman JW, Yorkston J, Siewerdsen JH, Zbijewski W (2017).  Modeling and evaluation of a high-resolution CMOS detector for cone-beam CT of the extremities.  Medical Physics.  (1).
  • Zhang C, Zbijewski W, Zhang X, Xu S, Stayman JW (2017).  Polyenergetic known-component reconstruction without prior shape models.  Progress in Biomedical Optics and Imaging - Proceedings of SPIE.  10132.
  • Sisniega A, Xu J, Dang H, Zbijewski W, Stayman JW, Mow M, Koliatsos VE, Aygun N, Wang X, Foos DH, Siewerdsen JH (2017).  Development and clinical translation of a cone-beam CT scanner for high-quality imaging of intracranial hemorrhage.  Progress in Biomedical Optics and Imaging - Proceedings of SPIE.  10132.
  • Mow M, Zbijewski W, Sisniega A, Xu J, Dang H, Stayman JW, Wang X, Foos DH, Koliatsos V, Aygun N, Siewerdsen JH (2017).  Brain perfusion imaging using a Reconstruction-of-Difference (RoD) approach for cone-beam computed tomography.  Progress in Biomedical Optics and Imaging - Proceedings of SPIE.  10132.
  • Mathews AJ, Gang G, Levinson R, Zbijewski W, Kawamoto S, Siewerdsen JH, Stayman JW (2017).  Experimental evaluation of dual multiple aperture devices for fluence field modulated x-ray computed tomography.  Progress in Biomedical Optics and Imaging - Proceedings of SPIE.  10132.
  • Gomes J, Gang GJ, Mathews A, Stayman JW (2017).  An investigation of low-dose 3D scout scans for computed tomography.  Progress in Biomedical Optics and Imaging - Proceedings of SPIE.  10132.
  • Cao Q, Zbijewski W, Sisniega A, Yorkston J, Siewerdsen JH, Stayman JW (2016).  Multiresolution iterative reconstruction in high-resolution extremity cone-beam CT.  Physics in Medicine and Biology.  61(20).
  • Xu J, Sisniega A, Zbijewski W, Dang H, Stayman JW, Mow M, Wang X, Foos DH, Koliatsos VE, Aygun N, Siewerdsen JH (2016).  Technical assessment of a prototype cone-beam CT system for imaging of acute intracranial hemorrhage.  Medical Physics.  43(10).
  • Xu J, Sisniega A, Zbijewski W, Dang H, Stayman JW, Wang X, Foos DH, Aygun N, Koliatsos VE, Siewerdsen JH (2016).  Evaluation of detector readout gain mode and bowtie filters for cone-beam CT imaging of the head.  Physics in Medicine and Biology.  61(16).
  • Xu J, Sisniega A, Zbijewski W, Dang H, Stayman JW, Wang X, Foos DH, Aygun N, Koliatsos VE, Siewerdsen JH (2016).  Modeling and design of a cone-beam CT head scanner using task-based imaging performance optimization.  Physics in Medicine and Biology.  61(8).
  • Ouadah S, Stayman JW, Gang GJ, Ehtiati T, Siewerdsen JH (2016).  Self-calibration of cone-beam CT geometry using 3D-2D image registration.  Physics in Medicine and Biology.  61(7).
  • Pourmorteza A, Dang H, Siewerdsen JH, Stayman JW (2016).  Reconstruction of difference in sequential CT studies using penalized likelihood estimation.  Physics in Medicine and Biology.  61(5).
  • Stayman JW, Mathews A, Zbijewski W, Gang G, Siewerdsen J, Kawamoto S, Blevis I, Levinson R (2016).  Fluence-field modulated x-ray CT using multiple aperture devices.  Progress in Biomedical Optics and Imaging - Proceedings of SPIE.  9783.
  • Gang GJ, Siewerdsen JH, Stayman JW (2016).  Task-driven tube current modulation and regularization design in computed tomography with penalized-likelihood reconstruction.  Progress in Biomedical Optics and Imaging - Proceedings of SPIE.  9783.
  • Sisniega A, Stayman JW, Cao Q, Yorkston J, Siewerdsen JH, Zbijewski W (2016).  Image-based motion compensation for high-resolution extremities cone-beam CT.  Progress in Biomedical Optics and Imaging - Proceedings of SPIE.  9783.
  • Dang H, Stayman JW, Xu J, Sisniega A, Zbijewski W, Wang X, Foos DH, Aygun N, Koliatsos VE, Siewerdsen JH (2016).  Regularization design for high-quality cone-beam CT of intracranial hemorrhage using statistical reconstruction.  Progress in Biomedical Optics and Imaging - Proceedings of SPIE.  9783.
  • Tilley S, Siewerdsen JH, Zbijewski W, Stayman JW (2016).  Nonlinear statistical reconstruction for flat-panel cone-beam CT with blur and correlated noise models.  Progress in Biomedical Optics and Imaging - Proceedings of SPIE.  9783.
  • Pourmorteza A, Siewerdsen JH, Stayman JW (2016).  A generalized Fourier penalty in prior-image-based reconstruction for cross-platform imaging.  Progress in Biomedical Optics and Imaging - Proceedings of SPIE.  9783.
  • Xu J, Sisniega A, Zbijewski W, Dang H, Stayman JW, Wang X, Foos DH, Aygun N, Koliatsos VE, Siewerdsen JH (2016).  Design and characterization of a dedicated cone-beam CT scanner for detection of acute intracranial hemorrhage.  Progress in Biomedical Optics and Imaging - Proceedings of SPIE.  9783.
  • Tilley S, Siewerdsen JH, Stayman JW (2015).  Model-based iterative reconstruction for flat-panel cone-beam CT with focal spot blur, detector blur, and correlated noise.  Physics in Medicine and Biology.  61(1).
  • Sisniega A, Zbijewski W, Stayman JW, Xu J, Taguchi K, Fredenberg E, Lundqvist M, Siewerdsen JH (2015).  Volumetric CT with sparse detector arrays (and application to Si-strip photon counters).  Physics in Medicine and Biology.  61(1).
  • Dang H, Siewerdsen JH, Stayman JW (2015).  Prospective regularization design in prior-image-based reconstruction.  Physics in Medicine and Biology.  60(24).
  • Uneri A, De Silva T, Stayman JW, Kleinszig G, Vogt S, Khanna AJ, Gokaslan ZL, Wolinsky JP, Siewerdsen JH (2015).  Known-component 3D-2D registration for quality assurance of spine surgery pedicle screw placement.  Physics in Medicine and Biology.  60(20).
  • Dang H, Stayman JW, Sisniega A, Xu J, Zbijewski W, Wang X, Foos DH, Aygun N, Koliatsos VE, Siewerdsen JH (2015).  Statistical reconstruction for cone-beam CT with a post-artifact-correction noise model: Application to high-quality head imaging.  Physics in Medicine and Biology.  60(16).
  • Demehri S, Muhit A, Zbijewski W, Stayman JW, Yorkston J, Packard N, Senn R, Yang D, Foos D, Thawait GK, Fayad LM, Chhabra A, Carrino JA, Siewerdsen JH (2015).  Assessment of image quality in soft tissue and bone visualization tasks for a dedicated extremity cone-beam CT system.  European Radiology.  25(6).
  • Wang AS, Stayman JW, Otake Y, Vogt S, Kleinszig G, Siewerdsen JH (2015).  Accelerated statistical reconstruction for C-arm cone-beam CT using Nesterov's method.  Medical Physics.  42(5).
  • Gang GJ, Stayman JW, Ehtiati T, Siewerdsen JH (2015).  Task-driven image acquisition and reconstruction in cone-beam CT.  Physics in Medicine and Biology.  60(8).
  • Sisniega A, Zbijewski W, Xu J, Dang H, Stayman JW, Yorkston J, Aygun N, Koliatsos V, Siewerdsen JH (2015).  High-fidelity artifact correction for cone-beam CT imaging of the brain.  Physics in Medicine and Biology.  60(4).
  • Sisniega A, Zbijewski W, Stayman JW, Xu J, Taguchi K, Siewerdsen JH (2015).  Spectral CT of the extremities with a silicon strip photon counting detector.  Progress in Biomedical Optics and Imaging - Proceedings of SPIE.  9412.
  • Dang H, Stayman JW, Sisniega A, Xu J, Zbijewski W, Yorkston J, Aygun N, Koliatsos V, Siewerdsen JH (2015).  Cone-beam CT of traumatic brain injury using statistical reconstruction with a post-artifact-correction noise model.  Progress in Biomedical Optics and Imaging - Proceedings of SPIE.  9412.
  • Zbijewski W, Sisniega A, Stayman JW, Thawait G, Packard N, Yorkston J, Demehri S, Fritz J, Siewerdsen JH (2015).  Dual-energy imaging of bone marrow edema on a dedicated multi-source cone-beam CT system for the extremities.  Progress in Biomedical Optics and Imaging - Proceedings of SPIE.  9412.
  • Uneri A, Stayman JW, De Silva T, Wang AS, Kleinszig G, Vogt S, Khanna AJ, Wolinsky JP, Gokaslan ZL, Siewerdsen JH (2015).  Known-component 3D-2D registration for image guidance and quality assurance in spine surgery pedicle screw placement.  Progress in Biomedical Optics and Imaging - Proceedings of SPIE.  9415.
  • Gang GJ, Stayman JW, Ouadah S, Ehtiati T, Siewerdsen JH (2015).  Task-driven imaging in cone-beam computed tomography.  Progress in Biomedical Optics and Imaging - Proceedings of SPIE.  9412.
  • Ouadah S, Stayman JW, Gang G, Uneri A, Ehtiati T, Siewerdsen JH (2015).  Self-calibration of cone-beam CT geometry using 3D-2D image registration: Development and application to tasked-based imaging with a Robotic C-arm.  Progress in Biomedical Optics and Imaging - Proceedings of SPIE.  9415.
  • Xu J, Zbijewski W, Gang G, Stayman JW, Taguchi K, Lundqvist M, Fredenberg E, Carrino JA, Siewerdsen JH (2014).  Cascaded systems analysis of photon counting detectors.  Medical Physics.  41(10).
  • Dang H, Wang AS, Sussman MS, Siewerdsen JH, Stayman JW (2014).  DPIRPLE: A joint estimation framework for deformable registration and penalized-likelihood CT image reconstruction using prior images.  Physics in Medicine and Biology.  59(17).
  • Wang AS, Stayman JW, Otake Y, Kleinszig G, Vogt S, Gallia GL, Khanna AJ, Siewerdsen JH (2014).  Soft-tissue imaging with C-arm cone-beam CT using statistical reconstruction.  Physics in Medicine and Biology.  59(4).
  • Zbijewski W, Gang GJ, Xu J, Wang AS, Stayman JW, Taguchi K, Carrino JA, Siewerdsen JH (2014).  Dual-energy cone-beam CT with a flat-panel detector: Effect of reconstruction algorithm on material classification.  Medical Physics.  41(2).
  • Sarapata A, Stayman JW, Finkenthal M, Siewerdsen JH, Pfeiffer F, Stutman D (2014).  High energy x-ray phase contrast CT using glancing-angle grating interferometers.  Medical Physics.  41(2).
  • Carrino JA, Muhit AA, Zbijewski W, Thawait GK, Stayman JW, Packard N, Senn R, Yang D, Foos DH, Yorkston J, Siewerdsen JH (2014).  Dedicated cone-beam CT system for extremity imaging.  Radiology.  270(3).
  • Wang AS, Stayman JW, Otake Y, Vogt S, Kleinszig G, Khanna AJ, Gallia GL, Siewerdsen JH (2014).  Low-dose preview for patient-specific, task-specific technique selection in cone-beam CT.  Medical Physics.  41(7).
  • Stayman JW, Zbijewski W, Tilley S, Siewerdsen J (2014).  Generalized least-squares CT reconstruction with detector blur and correlated noise models.  Progress in Biomedical Optics and Imaging - Proceedings of SPIE.  9033.
  • Sisniega A, Zbijewski W, Stayman J, Yorkston J, Aygun N, Koliatsos V, Siewerdsen J (2014).  TH-A-18C-09: Ultra-Fast Monte Carlo Simulation for Cone Beam CT Imaging of Brain Trauma.  Medical Physics.  41(6).  542-542.
  • Dang H, Siewerdsen JH, Stayman JW (2014).  Regularization design and control of change admission in prior-image-based reconstruction.  Progress in Biomedical Optics and Imaging - Proceedings of SPIE.  9033.
  • Zbijewski W, Sisniega A, Stayman JW, Muhit A, Thawait G, Packard N, Senn R, Yang D, Yorkston J, Carrino JA, Siewerdsen JH (2014).  High-performance soft-tissue imaging in extremity cone-beam CT.  Progress in Biomedical Optics and Imaging - Proceedings of SPIE.  9033.
  • Cammin J, Fung GSK, Fishman EK, Siewerdsen JH, Stayman JW, Taguchi K (2014).  A biological phantom for evaluation of CT image reconstruction algorithms.  Progress in Biomedical Optics and Imaging - Proceedings of SPIE.  9033.
  • Xu J, Zbijewski W, Gang G, Stayman JW, Taguchi K, Lundqvist M, Fredenberg E, Carrino JA, Siewerdsen JH (2014).  Cascaded systems modeling of signal, noise, and DQE for x-ray photon counting detectors.  Progress in Biomedical Optics and Imaging - Proceedings of SPIE.  9033.
  • Wang AS, Stayman JW, Otake Y, Khanna AJ, Gallia GL, Siewerdsen JH (2014).  Patient-specific minimum-dose imaging protocols for statistical image reconstruction in C-Arm cone-beam CT using correlated noise injection.  Progress in Biomedical Optics and Imaging - Proceedings of SPIE.  9033.
  • Gang GJ, Stayman JW, Zbijewski W, Siewerdsen JH (2014).  Task-based detectability in CT image reconstruction by filtered backprojection and penalized likelihood estimation.  Medical Physics.  41(8).
  • Zbijewski W, Gang G, Xu J, Wang A, Stayman J, Taguchi K, Carrino J, Siewerdsen J (2014).  Dual-energy cone-beam CT with a flat-panel detector: Effect of reconstruction algorithm on material classification.  Medical physics.  41(2).  021908.
  • Wang AS, Stayman J, Otake Y, Kleinszig G, Vogt S, Gallia GL, Khanna, A Jay , Siewerdsen JH (2014).  Soft-tissue imaging with C-arm cone-beam CT using statistical reconstruction.  Physics in medicine and biology.  59(4).  1005.
  • Sarapata A, Stayman J, Finkenthal M, Siewerdsen J, Pfeiffer F, Stutman D (2014).  High energy x-ray phase contrast CT using glancing-angle grating interferometers.  Medical physics.  41(2).  021904.
  • Wang AS, Stayman J, Otake Y, Vogt S, Kleinszig G, Khanna, A Jay , Gallia GL, Siewerdsen JH (2014).  Low-dose preview for patient-specific, task-specific technique selection in cone-beam CT.  Medical Physics.  41(7).  071915.
  • Otake Y, Wang AS, Webster Stayman J, Uneri A, Kleinszig G, Vogt S, Khanna AJ, Gokaslan ZL, Siewerdsen JH (2013).  Robust 3D-2D image registration: Application to spine interventions and vertebral labeling in the presence of anatomical deformation.  Physics in Medicine and Biology.  58(23).
  • Stayman JW, Dang H, Ding Y, Siewerdsen JH (2013).  PIRPLE: A penalized-likelihood framework for incorporation of prior images in CT reconstruction.  Physics in Medicine and Biology.  58(21).
  • Otake Y, Stayman JW, Zbijewski W, Murphy RJ, Kutzer MD, Taylor RH, Siewerdsen JH, Armand M (2013).  Model-based cone-beam CT reconstruction for image-guided minimally invasive treatment of hip osteolysis.  Proceedings of SPIE - The International Society for Optical Engineering.  8671.
  • Nithiananthan S, Uneri A, Schafer S, Mirota D, Otake Y, Stayman JW, Zbijewski W, Khanna AJ, Reh DD, Gallia GL, Siewerdsen JH (2013).  Deformable image registration with content mismatch: A demons variant to account for added material and surgical devices in the target image.  Proceedings of SPIE - The International Society for Optical Engineering.  8671.
  • Schafer S, Wang A, Otake Y, Stayman JW, Zbijewski W, Kleinszig G, Xia X, Gallia GL, Siewerdsen JH (2013).  Intraoperative imaging for patient safety and QA: Detection of intracranial hemorrhage using C-arm cone-beam CT.  Proceedings of SPIE - The International Society for Optical Engineering.  8671.
  • Stutman D, Stayman JW, Finkenthal M, Siewerdsen JH (2013).  High energy X-ray phase-contrast imaging using glancing angle grating interferometers.  Progress in Biomedical Optics and Imaging - Proceedings of SPIE.  8668.
  • Stayman JW, Dang H, Otake Y, Zbijewski W, Noble J, Dawant B, Labadie R, Carey JP, Siewerdsen JH (2013).  Overcoming nonlinear partial volume effects in known-component reconstruction of cochlear implants.  Progress in Biomedical Optics and Imaging - Proceedings of SPIE.  8668.
  • Gang GJ, Stayman JW, Zbijewski W, Siewerdsen JH (2013).  Modeling and control of nonstationary noise characteristics in filtered-backprojection and penalized likelihood image reconstruction.  Progress in Biomedical Optics and Imaging - Proceedings of SPIE.  8668.
  • Zbijewski W, Gang G, Wang AS, Stayman JW, Taguchi K, Carrino JA, Siewerdsen JH (2013).  Noise for reduction in material decomposition low-dose dual-energy cone-beam CT.  Progress in Biomedical Optics and Imaging - Proceedings of SPIE.  8668.
  • Wang AS, Schafer S, Stayman JW, Otake Y, Sussman MS, Khanna AJ, Gallia GL, Siewerdsen JH (2013).  Soft-tissue imaging in low-dose, C-arm cone-beam CT using statistical image reconstruction.  Progress in Biomedical Optics and Imaging - Proceedings of SPIE.  8668.
  • Muhit AA, Arora S, Ogawa M, Ding Y, Zbijewski W, Stayman JW, Thawait G, Packard N, Senn R, Yang D, Yorkston J, Bingham CO, Means K, Carrino JA, Siewerdsen JH (2013).  Peripheral quantitative CT (pQCT) using a dedicated extremity cone-beam CT scanner.  Progress in Biomedical Optics and Imaging - Proceedings of SPIE.  8672.
  • Sisniega A, Zbijewski W, Badal A, Kyprianou IS, Stayman JW, Vaquero JJ, Siewerdsen JH (2013).  Monte Carlo study of the effects of system geometry and antiscatter grids on cone-beam CT scatter distributions.  Medical Physics.  40(5).
  • Gang G, Stayman J, Zbijewski W, Siewerdsen J (2013).  Modeling and control of nonstationary noise characteristics in filtered-backprojection and penalized likelihood image reconstruction.  Proc. SPIE.  8668.  86681G.
  • Gang G, Stayman J, Zbijewski W, Siewerdsen J (2013).  SU-F-500-03: Modeling Nonstationary Noise and Task-Based Detectability in CT Images Computed by Filtered Backprojection and Model-Based Iterative Reconstruction.  Medical Physics.  40(6).  383-383.
  • Uneri A, Nithiananthan S, Schafer S, Otake Y, Stayman JW, Kleinszig G, Sussman MS, Prince JL, Siewerdsen JH (2013).  Deformable registration of the inflated and deflated lung in cone-beam CT-guided thoracic surgery: Initial investigation of a combined model- and image-driven approach.  Medical Physics.  40(1).
  • Xu J, Zbijewski W, Gang G, Fredenberg E, Taguchi K, Carrino J, Stayman J, Siewerdsen J (2013).  TH-A-103-03: Cascaded Systems Analysis of a Silicon-Strip Photon Counting CT System.  Medical Physics.  40(6).  526-526.
  • Applegate K, Stayman J (2013).  MO-A-134-01: Computed Tomography 1: Iterative Reconstruction and Imaging Gently (or, Squeezing the Most Out of Every Photon and the Benefit of Doing So).  Medical Physics.  40(6).  391-391.
  • xu J, Zbijewski W, Gang G, Fredenberg E, Taguchi K, Carrino J, Stayman J, Siewerdsen J (2013).  TH‐A‐103‐03: Cascaded Systems Analysis of a Silicon‐Strip Photon Counting CT System.  Medical Physics.  40(6).
  • Otake Y, Wang AS, Stayman J, Uneri A, Kleinszig G, Vogt S, Khanna, A Jay , Gokaslan ZL, Siewerdsen JH (2013).  Robust 3D-2D image registration: application to spine interventions and vertebral labeling in the presence of anatomical deformation.  Physics in medicine and biology.  58(23).  8535.
  • Dang H, Wang AS, Zhao Z, Sussman MS, Siewerdsen JH, Stayman J (2013).  Joint Estimation of Deformation and Penalized-Likelihood CT Reconstruction Using Previously Acquired Images.  Proc. Intl. Mtg. on Fully 3D Image Recon. in Rad. and Nuc. Med.  424-427.
  • Applegate K, Stayman J (2013).  MO‐A‐134‐01: Computed Tomography 1: Iterative Reconstruction and Imaging Gently (or, Squeezing the Most Out of Every Photon and the Benefit of Doing So).  Medical Physics.  40(6).
  • Gang G, Stayman J, Zbijewski W, Siewerdsen J (2013).  SU‐F‐500‐03: Modeling Nonstationary Noise and Task‐Based Detectability in CT Images Computed by Filtered Backprojection and Model‐Based Iterative Reconstruction.  Medical Physics.  40(6).
  • Uneri A, Nithiananthan S, Schafer S, Otake Y, Stayman J, Kleinszig G, Sussman MS, Prince J, Siewerdsen JH (2013).  Deformable registration of the inflated and deflated lung in cone-beam CT-guided thoracic surgery: Initial investigation of a combined model-and image-driven approach.  Medical physics.  40(1).  017501.
  • Carrino JA, Al Muhit A, Zbijewski W, Thawait GK, Stayman J, Packard N, Senn R, Yang D, Foos DH, Yorkston J, others (2013).  Dedicated cone-beam CT system for extremity imaging.  Radiology.  270(3).  816-824.
  • Stayman J, Dang H, Ding Y, Siewerdsen JH (2013).  PIRPLE: a penalized-likelihood framework for incorporation of prior images in CT reconstruction.  Physics in medicine and biology.  58(21).  7563.
  • Sisniega A, Zbijewski W, Badal A, Kyprianou I, Stayman J, Vaquero JJ, Siewerdsen J (2013).  Monte Carlo study of the effects of system geometry and antiscatter grids on cone-beam CT scatter distributions.  Medical physics.  40(5).  051915.
  • Stayman JW, Otake Y, Prince JL, Khanna AJ, Siewerdsen JH (2012).  Model-based tomographic reconstruction of objects containing known components.  IEEE Transactions on Medical Imaging.  31(10).
  • Dang H, Otake Y, Schafer S, Stayman JW, Kleinszig G, Siewerdsen JH (2012).  Robust methods for automatic image-to-world registration in cone-beam CT interventional guidance.  Medical Physics.  39(10).
  • Otake Y, Schafer S, Stayman JW, Zbijewski W, Kleinszig G, Graumann R, Khanna AJ, Siewerdsen JH (2012).  Automatic localization of vertebral levels in x-ray fluoroscopy using 3D-2D registration: A tool to reduce wrong-site surgery.  Physics in Medicine and Biology.  57(17).
  • Fredenberg E, Danielsson M, Stayman JW, Siewerdsen JH, Åslund M (2012).  Ideal-observer detectability in photon-counting differential phase-contrast imaging using a linear-systems approach.  Medical Physics.  39(9).
  • Nithiananthan S, Schafer S, Mirota DJ, Stayman JW, Zbijewski W, Reh DD, Gallia GL, Siewerdsen JH (2012).  Extra-dimensional Demons: A method for incorporating missing tissue in deformable image registration.  Medical Physics.  39(9).
  • Reaungamornrat S, Otake Y, Uneri A, Schafer S, Mirota DJ, Nithiananthan S, Stayman JW, Kleinszig G, Khanna AJ, Taylor RH, Siewerdsen JH (2012).  An on-board surgical tracking and video augmentation system for C-arm image guidance.  International Journal of Computer Assisted Radiology and Surgery.  7(5).
  • Lee S, Gallia GL, Reh DD, Schafer S, Uneri A, Mirota DJ, Nithiananthan S, Otake Y, Stayman JW, Zbijewski W, Siewerdsen JH (2012).  Intraoperative C-arm cone-beam computed tomography: Quantitative analysis of surgical performance in skull base surgery.  Laryngoscope.  122(9).
  • Lee J, Stayman JW, Otake Y, Schafer S, Zbijewski W, Khanna AJ, Prince JL, Siewerdsen JH (2012).  Volume-of-change cone-beam CT for image-guided surgery.  Physics in Medicine and Biology.  57(15).
  • Gang GJ, Zbijewski W, Webster Stayman J, Siewerdsen JH (2012).  Cascaded systems analysis of noise and detectability in dual-energy cone-beam CT.  Medical Physics.  39(8).
  • Gang GJ, Zbijewski W, Stayman JW, Carrino JA, Siewerdsen JH (2012).  Theoretical framework for the dual-energy cone-beam CT noise-power spectrum, NEQ, and tasked-based detectability index.  Progress in Biomedical Optics and Imaging - Proceedings of SPIE.  8313.
  • Ding Y, Siewerdsen JH, Stayman JW (2012).  Incorporation of noise and prior images in penalized-likelihood reconstruction of sparse data.  Progress in Biomedical Optics and Imaging - Proceedings of SPIE.  8313.
  • Stayman JW, Otake Y, Schafer S, Khanna AJ, Prince JL, Siewerdsen JH (2012).  Model-based reconstruction of objects with inexactly known components.  Progress in Biomedical Optics and Imaging - Proceedings of SPIE.  8313.
  • Schafer S, Otake Y, Uneri A, Mirota DJ, Nithiananthan S, Stayman JW, Zbijewski W, Kleinszig G, Graumann R, Sussman M, Siewerdsen JH (2012).  High-performance C-arm cone-beam CT guidance of thoracic surgery.  Progress in Biomedical Optics and Imaging - Proceedings of SPIE.  8316.
  • Uneri A, Nithiananthan S, Schafer S, Otake Y, Stayman JW, Kleinszig G, Sussman MS, Taylor RH, Prince JL, Siewerdsen JH (2012).  Deformable registration of the inflated and deflated lung for cone-beam CT-guided thoracic surgery.  Progress in Biomedical Optics and Imaging - Proceedings of SPIE.  8316.
  • Reaungamornrat S, Otake Y, Uneri A, Schafer S, Mirota DJ, Nithiananthan S, Stayman JW, Khanna AJ, Reh DD, Gallia GL, Taylor RH, Siewerdsen JH (2012).  Tracker-on-C for cone-beam CT-guided surgery: Evaluation of geometric accuracy and clinical applications.  Progress in Biomedical Optics and Imaging - Proceedings of SPIE.  8316.
  • Lee J, Stayman JW, Otake Y, Schafer S, Zbijewski W, Khanna AJ, Prince JL, Siewerdsen JH (2012).  Incorporation of prior knowledge for region of change imaging from sparse scan data in image-guided surgery.  Progress in Biomedical Optics and Imaging - Proceedings of SPIE.  8316.
  • Otake Y, Schafer S, Stayman JW, Zbijewski W, Kleinszig G, Graumann R, Khanna AJ, Siewerdsen JH (2012).  Automatic localization of target vertebrae in spine surgery using fast CT-to-fluoroscopy (3D-2D) image registration.  Progress in Biomedical Optics and Imaging - Proceedings of SPIE.  8316.
  • Nithiananthan S, Schafer S, Mirota DJ, Stayman J, Zbijewski W, Reh DD, Gallia GL, Siewerdsen JH (2012).  Extra-dimensional demons: a method for incorporating missing tissue in deformable image registration.  Medical physics.  39(9).  5718-5731.
  • Dang H, Otake Y, Schafer S, Stayman J, Kleinszig G, Siewerdsen J (2012).  Robust methods for automatic image-to-world registration in cone-beam CT interventional guidance.  Medical physics.  39(10).  6484-6498.
  • Stayman J (2012).  TH-B-218-01: Iterative Reconstruction Methods in Computed Tomography.  Medical Physics.  39(6).  3992-3993.
  • Stayman J, Otake Y, Prince J, Khanna, A Jay , Siewerdsen JH (2012).  Model-based tomographic reconstruction of objects containing known components.  Medical Imaging, IEEE Transactions on.  31(10).  1837-1848.
  • Stayman J, Prince J, Siewerdsen JH (2012).  Information propagation in prior-image-based reconstruction.  Proc. 2nd Intl. Conf. on Image Formation in X-ray CT.  334-338.
  • Stayman J, Prince J, Siewerdsen J (2012).  TU-A-213CD-03: Information Source Mapping in Prior-Image-Based Reconstruction..  Medical physics.  39(6).  3891.
  • Zbijewski W, Stayman J, Otake Y, Carrino J, Khanna A, Siewerdsen J (2012).  WE‐G‐217BCD‐01: BEST IN PHYSICS (IMAGING) ‐ High‐Quality CT Imaging in the Presence of Surgical Instrumentation Using Spectral System Models and Knowledge of Implanted Devices.  Medical Physics.  39(6).
  • Schafer S, Stayman J, Zbijewski W, Schmidgunst C, Kleinszig G, Siewerdsen J (2012).  Antiscatter grids in mobile C-arm cone-beam CT: Effect on image quality and dose.  Medical physics.  39(1).  153-159.
  • Muhit A, Zbijewski W, Stayman J, Thawait G, Yorkston J, Foos D, Packard N, Yang D, Senn R, Carrino J, Siewerdsen J (2012).  WE‐G‐217BCD‐04: Diagnostic Image Quality Evaluation of a Dedicated Extremity Cone‐ Beam CT Scanner: Pre‐Clinical Studies and First Clinical Results.  Medical Physics.  39(6).
  • Muhit A, Zbijewski W, Stayman J, Thawait G, Yorkston J, Foos D, Packard N, Yang D, Senn R, Carrino J, others (2012).  WE-G-217BCD-04: Diagnostic Image Quality Evaluation of a Dedicated Extremity Cone-Beam CT Scanner: Pre-Clinical Studies and First Clinical Results.  Medical Physics.  39(6).  3973-3973.
  • Stayman J, Prince J, Siewerdsen J (2012).  TU‐A‐213CD‐03: Information Source Mapping in Prior‐0Image‐Based Reconstruction.  Medical Physics.  39(6).
  • Schafer S, Stayman JW, Zbijewski W, Schmidgunst C, Kleinszig G, Siewerdsen JH (2012).  Antiscatter grids in mobile C-arm cone-beam CT: Effect on image quality and dose.  Medical Physics.  39(1).
  • Reaungamornrat S, Otake Y, Uneri A, Schafer S, Mirota D, Nithiananthan S, Stayman J, Khanna A, Reh D, Gallia G, others (2012).  Tracker-on-C for cone-beam CT-guided surgery: evaluation of geometric accuracy and clinical applications.  Proc SPIE.  8316.  831609-831611.
  • Fredenberg E, Danielsson M, Stayman J, Siewerdsen JH, Åslund M (2012).  Ideal-observer detectability in photon-counting differential phase-contrast imaging using a linear-systems approach.  Medical physics.  39(9).  5317-5335.
  • Gang GJ, Zbijewski W, Stayman J, Siewerdsen JH (2012).  Cascaded systems analysis of noise and detectability in dual-energy cone-beam CT.  Medical physics.  39(8).  5145-5156.
  • Reaungamornrat S, Otake Y, Uneri A, Schafer S, Mirota D, Nithiananthan S, Stayman J, Kleinszig G, Khanna, A Jay , Taylor R, others (2012).  An on-board surgical tracking and video augmentation system for C-arm image guidance.  International journal of computer assisted radiology and surgery.  7(5).  647-665.
  • Lee J, Stayman J, Otake Y, Schafer S, Zbijewski W, Khanna, A Jay , Prince J, Siewerdsen JH (2012).  Volume-of-change cone-beam CT for image-guided surgery.  Physics in medicine and biology.  57(15).  4969.
  • Lee S, Gallia GL, Reh DD, Schafer S, Uneri A, Mirota DJ, Nithiananthan S, Otake Y, Stayman J, Zbijewski W, others (2012).  Intraoperative C-arm cone-beam computed tomography: Quantitative analysis of surgical performance in skull base surgery.  The Laryngoscope.  122(9).  1925-1932.
  • Zbijewski W, Stayman J, Otake Y, Carrino J, Khanna A, Siewerdsen J (2012).  WE-G-217BCD-01: BEST IN PHYSICS (IMAGING)-High-Quality CT Imaging in the Presence of Surgical Instrumentation Using Spectral System Models and Knowledge of Implanted Devices.  Medical Physics.  39(6).  3972-3973.
  • Stayman J (2012).  TH‐B‐218‐01: Iterative Reconstruction Methods in Computed Tomography.  Medical Physics.  39(6).
  • Zbijewski W, Stayman J, Muhit A, Yorkston J, Carrino JA, Siewerdsen JH (2012).  CT Reconstruction Using Spectral and Morphological Prior Knowledge: Application to Imaging the Prosthetic Knee.  The Second International Conference on Image Formation in X-Ray Computed Tomography.  434-438.
  • Prakash P, Zbijewski W, Gang GJ, Ding Y, Stayman JW, Yorkston J, Carrino JA, Siewerdsen JH (2011).  Task-based modeling and optimization of a cone-beam CT scanner for musculoskeletal imaging.  Medical Physics.  38(10).
  • Zbijewski W, De Jean P, Prakash P, Ding Y, Stayman JW, Packard N, Senn R, Yang D, Yorkston J, MacHado A, Carrino JA, Siewerdsen JH (2011).  A dedicated cone-beam CT system for musculoskeletal extremities imaging: Design, optimization, and initial performance characterization.  Medical Physics.  38(8).
  • Schafer S, Nithiananthan S, Mirota DJ, Uneri A, Stayman JW, Zbijewski W, Schmidgunst C, Kleinszig G, Khanna AJ, Siewerdsen JH (2011).  Mobile C-arm cone-beam CT for guidance of spine surgery: Image quality, radiation dose, and integration with interventional guidance.  Medical Physics.  38(8).
  • Nithiananthan S, Mirota D, Uneri A, Schafer S, Otake Y, Stayman JW, Siewerdsen JH (2011).  Incorporating tissue excision in deformable image registration: A modified demons algorithm for cone-beam CT-guided surgery.  Progress in Biomedical Optics and Imaging - Proceedings of SPIE.  7964.
  • Uneri A, Schafer S, Mirota D, Nithiananthan S, Otake Y, Reaungamornrat S, Yoo J, Stayman JW, Reh D, Gallia GL, Khanna AJ, Hager G, Taylor RH, Kleinszig G, Siewerdsen JH (2011).  Architecture of a high-performance surgical guidance system based on C-arm cone-beam CT: Software platform for technical integration and clinical translation.  Progress in Biomedical Optics and Imaging - Proceedings of SPIE.  7964.
  • Stayman JW, Zbijewski W, Otake Y, Uneri A, Schafer S, Lee J, Prince JL, Siewerdsen JH (2011).  Penalized-likelihood reconstruction for sparse data acquisitions with unregistered prior images and compressed sensing penalties.  Progress in Biomedical Optics and Imaging - Proceedings of SPIE.  7961.
  • Zbijewski W, De Jean P, Prakash P, Ding Y, Stayman JW, Packard N, Senn R, Yang D, Yorkston J, MacHado A, Carrino JA, Siewerdsen JH (2011).  Design and optimization of a dedicated cone-beam CT system for musculoskeletal extremities imaging.  Progress in Biomedical Optics and Imaging - Proceedings of SPIE.  7961.
  • Gang GJ, Lee J, Stayman JW, Tward DJ, Zbijewski W, Prince JL, Siewerdsen JH (2011).  Analysis of Fourier-domain task-based detectability index in tomosynthesis and cone-beam CT in relation to human observer performance.  Medical Physics.  38(4).
  • Nithiananthan S, Schafer S, Uneri A, Mirota DJ, Stayman JW, Zbijewski W, Brock KK, Daly MJ, Chan H, Irish JC, Siewerdsen JH (2011).  Demons deformable registration of CT and cone-beam CT using an iterative intensity matching approach.  Medical Physics.  38(4).
  • Schafer S, Uneri A, Mirota D, Nithiananthan S, Stayman J, Zbijewski W, Kleinszig G, Schmidgunst C, Sussman M, Siewerdsen J (2011).  MO‐D‐BRC‐02: Image Guidance in Video‐Assisted Thoracoscopic Surgery (VATS) Using a Mobile C‐Arm for Cone‐Beam CT: Image Quality, Dose, and First Experience in Visualizing the Fully Deflated Lung.  Medical Physics.  38(6).
  • Nithiananthan S, Schafer S, Mirota DJ, Uneri A, Otake Y, Stayman JW, Siewerdsen JH (2011).  SU‐E‐J‐47: Deformable Image Registration in the Presence of Excised Tissue: A Modified Demons Algorithm for Cone‐Beam CT‐Guided Surgery.  Medical Physics.  38(6).
  • Stayman J, Otake Y, Uneri A, Prince J, Siewerdsen J (2011).  WE‐A‐301‐04: Model‐Based Known Component Reconstruction for Computed Tomography.  Medical Physics.  38(6).
  • Zbijewski W, Stayman J, Ding Y, Prakash P, Machado A, Carrino J, Siewerdsen J (2011).  TU‐G‐110‐02: Contrast‐Enhanced Dual‐Energy Cone‐Beam CT for Musculoskeletal Radiology.  Medical Physics.  38(6).
  • Schafer S, Otake Y, Uneri A, Mirota D, Nithiananthan S, Stayman J, Zbijewski W, Schmidgunst C, Kleinszig G, Siewerdsen J (2011).  TH‐E‐110‐09: Grids Revisited: The Effect of Antiscatter Grids on Image Quality and Dose in Mobile C‐Arm Cone‐Beam CT for Image‐Guided Surgery.  Medical Physics.  38(6).
  • Stayman J, Zbijewski W, Otake Y, Schafer S, Lee J, Prince J, Siewerdsen J (2011).  WE‐A‐301‐07: Using Prior Images with Registration in Penalized Likelihood Estimation for CT with Sparse Data.  Medical Physics.  38(6).
  • Gang G, Prakash P, Zbijewski W, Stayman J, Siewerdsen J (2011).  WE‐G‐110‐02: A Cascaded Systems Model for Imaging Performance and Task‐Based Optimization in Dual‐Energy Cone‐Beam CT.  Medical Physics.  38(6).
  • Schafer S, Otake Y, Uneri A, Mirota D, Nithiananthan S, Stayman J, Zbijewski W, Schmidgunst C, Kleinszig G, Siewerdsen J (2011).  TH-E-110-09: Grids Revisited: The Effect of Antiscatter Grids on Image Quality and Dose in Mobile C-Arm Cone-Beam CT for Image-Guided Surgery.  Medical Physics.  38(6).  3875-3875.
  • Stayman J, Otake Y, Uneri A, Prince J, Siewerdsen JH (2011).  Likelihood-based CT reconstruction of objects containing known components.  11th International Meeting on Fully Three-Dimensional Image Reconstruction in Radiology and Nuclear Medicine.  254-257.
  • Zbijewski W, Stayman J, Ding Y, Prakash P, Machado A, Carrino J, Siewerdsen J (2011).  TU-G-110-02: Contrast-Enhanced Dual-Energy Cone-Beam CT for Musculoskeletal Radiology.  Medical Physics.  38(6).  3784-3784.
  • Stayman J, Otake Y, Uneri A, Prince J, Siewerdsen J (2011).  WE-A-301-04: Model-Based Known Component Reconstruction for Computed Tomography.  Medical Physics.  38(6).  3796-3796.
  • Nithiananthan S, Schafer S, Mirota D, Uneri A, Otake Y, Stayman J, Siewerdsen J (2011).  SU-E-J-47: Deformable Image Registration in the Presence of Excised Tissue: A Modified Demons Algorithm for Cone-Beam CT-Guided Surgery.  Medical Physics.  38(6).  3452-3452.
  • Gang GJ, Lee J, Stayman J, Tward DJ, Zbijewski W, Prince J, Siewerdsen JH (2011).  Analysis of Fourier-domain task-based detectability index in tomosynthesis and cone-beam CT in relation to human observer performance.  Medical physics.  38(4).  1754-1768.
  • Zbijewski W, De Jean P, Prakash P, Ding Y, Stayman J, Packard N, Senn R, Yang D, Yorkston J, Machado A, others (2011).  A dedicated cone-beam CT system for musculoskeletal extremities imaging: design, optimization, and initial performance characterization.  Medical physics.  38(8).  4700-4713.
  • Prakash P, Zbijewski W, Gang G, Ding Y, Stayman J, Yorkston J, Carrino J, Siewerdsen J (2011).  Task-based modeling and optimization of a cone-beam CT scanner for musculoskeletal imaging.  Medical physics.  38(10).  5612-5629.
  • Reaungamornrat S, Otake Y, Uneri A, Schafer S, Stayman J, Zbijewski W, Mirota D, Yoo J, Nithiananthan S, Khanna A, others (2011).  Tracker-on-C: A novel tracker configuration for image-guided therapy using a mobile C-arm.  Computer Assisted Radiology and Surgery, Berlin, Germany.  22-25.
  • Schafer S, Nithiananthan S, Mirota D, Uneri A, Stayman J, Zbijewski W, Schmidgunst C, Kleinszig G, Khanna A, Siewerdsen J (2011).  Mobile C-arm cone-beam CT for guidance of spine surgery: Image quality, radiation dose, and integration with interventional guidance.  Medical physics.  38(8).  4563-4574.
  • Nithiananthan S, Schafer S, Uneri A, Mirota DJ, Stayman J, Zbijewski W, Brock KK, Daly MJ, Chan H, Irish JC, others (2011).  Demons deformable registration of CT and cone-beam CT using an iterative intensity matching approach.  Medical physics.  38(4).  1785-1798.
  • Schafer S, Uneri A, Mirota D, Nithiananthan S, Stayman J, Zbijewski W, Kleinszig G, Schmidgunst C, Sussman M, Siewerdsen J (2011).  Thoraco-abdominal surgery.  Int J CARS.  6(1).  S103-S107.
  • Schafer S, Uneri A, Mirota D, Nithiananthan S, Stayman J, Zbijewski W, Kleinszig G, Schmidgunst C, Sussman M, Siewerdsen J (2011).  MO-D-BRC-02: Image Guidance in Video-Assisted Thoracoscopic Surgery (VATS) Using a Mobile C-Arm for Cone-Beam CT: Image Quality, Dose, and First Experience in Visualizing the Fully Deflated Lung.  Medical Physics.  38(6).  3712-3712.
  • Gang G, Prakash P, Zbijewski W, Stayman J, Siewerdsen J (2011).  WE-G-110-02: A Cascaded Systems Model for Imaging Performance and Task-Based Optimization in Dual-Energy Cone-Beam CT.  Medical Physics.  38(6).  3833-3833.
  • Kreucher C, Stayman JW, Shapo B, Stuff M (2010).  Exploiting a constellation of narrowband RF sensors to detect and track moving targets.  Conference Record - Asilomar Conference on Signals, Systems and Computers.
  • Gang GJ, Lee J, Stayman JW, Tward DJ, Zbijewski W, Prince JL, Siewerdsen JH (2010).  The generalized NEQ and detectability index for tomosynthesis and cone-beam CT: From cascaded systems analysis to human observers.  Progress in Biomedical Optics and Imaging - Proceedings of SPIE.  7622(PART 1).
  • Gang G, Lee J, Stayman J, Tward D, Zbijewski W, Prince J, Siewerdsen J (2010).  TH‐D‐201B‐01: Task‐Based Analysis of Detectability in Tomosynthesis and Cone‐Beam CT: Validation of Fourier Metrics in Comparison to Real Observers.  Medical Physics.  37(6).
  • Gang G, Lee J, Stayman J, Tward D, Zbijewski W, Prince J, Siewerdsen J (2010).  TH-D-201B-01: Task-Based Analysis of Detectability in Tomosynthesis and Cone-Beam CT: Validation of Fourier Metrics in Comparison to Real Observers.  Medical Physics.  37(6).  3471-3472.
  • Stayman J, Zbijewski W, Otake Y, Prince J, Siewerdsen J (2010).  TH-D-201B-07: Predicting Noise and Resolution Properties in Tomosynthesis with Statistical Image Reconstruction.  Medical Physics.  37(6).  3473-3473.
  • Zbijewski W, de Jean P, Prakash P, Stayman J, Packard N, Senn R, Yang D, Yorkston J, Machado A, Carrino J, Siewerdsen J (2010).  TU‐E‐201B‐03: Design and Initial Performance Characterization of a Dedicated Cone‐Beam CT System for Musculoskeletal Extremities Imaging.  Medical Physics.  37(6).
  • de Jean P, Ding Y, Ray B, Stayman J, Yang CJ, Yorkston J, Foos D, Machado A, Mahesh M, Carrino J, Siewerdsen J (2010).  WE‐E‐201C‐02: Portable Dual‐Energy Imaging with a Wireless DR Detector: Optimal Technique and Material Decomposition for High‐Performance ICU Imaging.  Medical Physics.  37(6).
  • Schafer S, Otake Y, Uneri A, Mirota D, Nithiananthan S, Zbijewski W, Stayman J, Schmidgunst C, Bulitta C, Khanna A, Siewerdsen J (2010).  TU‐D‐204B‐05: Cone‐Beam CT for Guidance of Spine Surgery: Performance and Integration of a New High‐Performance C‐Arm Prototype.  Medical Physics.  37(6).
  • Schafer S, Otake Y, Uneri A, Mirota D, Nithiananthan S, Zbijewski W, Stayman J, Schmidgunst C, Bulitta C, Khanna A, others (2010).  TU-D-204B-05: Cone-Beam CT for Guidance of Spine Surgery: Performance and Integration of a New High-Performance C-Arm Prototype.  Medical Physics.  37(6).  3394-3394.
  • Stayman J, Zbijewski W, Otake Y, Prince J, Siewerdsen J (2010).  TH‐D‐201B‐07: Predicting Noise and Resolution Properties in Tomosynthesis with Statistical Image Reconstruction.  Medical Physics.  37(6).
  • Zbijewski W, De Jean P, Prakash P, Stayman J, Packard N, Senn R, Yang D, Yorkston J, Machado A, Carrino J, others (2010).  TU-E-201B-03: Design and Initial Performance Characterization of a Dedicated Cone-Beam CT System for Musculoskeletal Extremities Imaging.  Medical Physics.  37(6).  3407-3407.
  • De Jean P, Ding Y, Ray B, Stayman J, Yang C, Yorkston J, Foos D, Machado A, Mahesh M, Carrino J, others (2010).  WE-E-201C-02: Portable Dual-Energy Imaging with a Wireless DR Detector: Optimal Technique and Material Decomposition for High-Performance ICU Imaging.  Medical Physics.  37(6).  3439-3439.
  • Stayman JW, Subotic N, Buller W (2009).  An analysis of coded aperture acquisition and reconstruction using multi-frame code sequences for relaxed optical design constraints.  Proceedings of SPIE - The International Society for Optical Engineering.  7468.
  • Zbijewski W, Stayman JW (2009).  Volumetric soft tissue brain imaging on xCAT, a mobile, flat-panel X-ray CT system.  Progress in Biomedical Optics and Imaging - Proceedings of SPIE.  7258.
  • Zbijewski W, Stayman J (2009).  Volumetric soft tissue brain imaging on xCAT, a mobile, flat-panel X-ray CT system.  Proc. of SPIE Vol.  7258.  72582K-1.
  • Naik V, Stayman JW (2008).  Interactive intraoperative imaging and guidance with a pre-registered CT volume.  IEEE Nuclear Science Symposium Conference Record.
  • Zbijewski W, Webster Stayman J (2007).  XCAT: A mobile, flat-panel volumetric X-ray CT for head and neck imaging.  IEEE Nuclear Science Symposium Conference Record.  4.
  • Stayman JW (2007).  Maximum likelihood resolution recovery in X-ray CT with an extended focal spot.  IEEE Nuclear Science Symposium Conference Record.  4.
  • Alspaugh J, Christodoulou E, Goodsitt M, Stayman J (2007).  TH-D-L100J-04: Dose and Image Quality of Flat-Panel Detector Volume Computed Tomography for Sinus Imaging.  Medical Physics.  34(6).  2634-2634.
  • Stayman J, Wang E (2007).  TH‐D‐L100J‐03: An Investigation of the Spatial Resolution Properties of MiniCAT: Flat‐Panel‐Based Volume CT System for Head and Neck Imaging.  Medical Physics.  34(6).
  • Stayman J, Wang E (2007).  TH-D-L100J-03: An Investigation of the Spatial Resolution Properties of MiniCAT: Flat-Panel-Based Volume CT System for Head and Neck Imaging.  Medical Physics.  34(6).  2634-2634.
  • Alspaugh J, Christodoulou E, Goodsitt M, Stayman J (2007).  TH‐D‐L100J‐04: Dose and Image Quality of Flat‐Panel Detector Volume Computed Tomography for Sinus Imaging.  Medical Physics.  34(6).
  • Stayman J, Alspaugh J, Goodsitt M (2007).  TH‐D‐L100J‐01: XCAT: A Dedicated, Portable, Head and Neck Volume CT Scanner.  Medical Physics.  34(6).
  • Stayman JW, Fessler JA (2004).  Efficient calculation of resolution and covariance for penalized-likelihood reconstruction in fully 3-D SPECT.  IEEE Transactions on Medical Imaging.  23(12).
  • Stayman JW, Fessler JA (2004).  Compensation for Nonuniform Resolution Using Penalized-Likelihood Reconstruction in Space-Variant Imaging Systems.  IEEE Transactions on Medical Imaging.  23(3).
  • Stayman J, Fessler JA (2004).  Compensation for nonuniform resolution using penalized-likelihood reconstruction in space-variant imaging systems.  Medical Imaging, IEEE Transactions on.  23(3).  269-284.
  • Stayman J, Fessler JA (2004).  Efficient calculation of resolution and covariance for penalized-likelihood reconstruction in fully 3-D SPECT.  Medical Imaging, IEEE Transactions on.  23(12).  1543-1556.
  • Stayman JW, Fessler JA (2002).  Fast Methods for Approximation of Resolution and Covariance for SPECT.  IEEE Nuclear Science Symposium and Medical Imaging Conference.  2.
  • Stayman JW, Fessler JA (2001).  Nonnegative definite quadratic penalty design for penalized-likelihood reconstruction.  IEEE Nuclear Science Symposium and Medical Imaging Conference.  2.
  • Webster Stayman J, Fessler JA (2000).  Regularization for uniform spatial resolution properties in penalized-likelihood image reconstruction.  IEEE Transactions on Medical Imaging.  19(6).
  • Stayman J, Fessler JA (2000).  Regularization for uniform spatial resolution properties in penalized-likelihood image reconstruction.  Medical Imaging, IEEE Transactions on.  19(6).  601-615.
  • Fessler JA, Stayman J (1999).  Penalty Design for Uniform Spatial Resolution in 3D Penalized-Lilrelihood linage Reconstruction.
  • Stayman JW, Fessler JA (1998).  Spatially-variant roughness penalty design for uniform resolution in penalized-likelihood image reconstruction.  IEEE International Conference on Image Processing.  2.
  • Au Y, Holmes MH, Stayman J (1995).  Symbolic and numerical computing for chemical kinetic reaction schemes.  Computers in Physics.  9(6).  629-634.
  • Barron RL, Larson EC, Ward DG, Stayman JW (1995).  Analytical control synthesis for adaptive flying-qualities adherence.  IEEE Proceedings of the National Aerospace and Electronics Conference.  1.
  • Zbijewski W, Xu J, Steven Tilley, II , Stayman J, Taguchi K, Fredenberg E, Siewerdsen JH  Volumetric Imaging with Sparse Arrays of Photon Counting Silicon Strip Detectors.
  • Wang AS, Stayman J, OtaNe Y, Kleinszig G, Vogt S, Khanna, A Jay , GoNaslan ZL, Siewerdsen JH  Statistical Reconstruction for Soft Tissue Imaging with Low Dose CYarm ConeYBeam CT.
  • Stayman J, Noble J, Dawant B  Overcoming Nonlinear Partial Volume Effects Component Reconstruction of Cochlear Implants.
  • Lee S, Gallia G, Reh D, Schafer S, Uneri A, Mirota D, Nithiananthan S, Otake Y, Stayman J, Zbijewski W, others  Cone Beam CT-Assisted Endoscopic Sinus and Skull Base Surgery: Quantitative Analysis of Surgical Performance Using a Next-Generation C-Arm Prototype.  Skull Base.  21(S 01).  A030.
  • Sarapata A, Stayman J, Finkenthal M, Siewerdsen J, Pfeiffer F, Stutman D  A high fringe visibility glancing-angle grating interferometer for high energy X-ray phase contrast CT.
Conference Proceedings
  • Xu J, Zbijewski W, Gang G, Stayman J, Taguchi K, Lundqvist M, Fredenberg E, Carrino J, Siewerdsen J (2014).  Cascaded systems modeling of signal, noise, and DQE for x-ray photon counting detectors.  SPIE Medical Imaging.  903320-903320.
  • Zbijewski W, Sisniega A, Stayman J, Muhit A, Thawait G, Packard N, Senn R, Yang D, Yorkston J, Carrino J, others (2014).  High-performance soft-tissue imaging in extremity cone-beam CT.  SPIE Medical Imaging.  903329-903329.
  • Dang H, Siewerdsen JH, Stayman J (2014).  Regularization design and control of change admission in prior-image-based reconstruction.  SPIE Medical Imaging.  90330O-90330O.
  • Wang A, Stayman J, Otake Y, Khanna A, Gallia G, Siewerdsen J (2014).  Patient-specific minimum-dose imaging protocols for statistical image reconstruction in C-arm cone-beam CT using correlated noise injection.  SPIE Medical Imaging.  90331P-90331P.
  • Stayman J, Zbijewski W, Tilley S, Siewerdsen J (2014).  Generalized least-squares CT reconstruction with detector blur and correlated noise models.  SPIE Medical Imaging.  903335-903335.
  • Cammin J, Fung G, Fishman E, Siewerdsen J, Stayman J, Taguchi K (2014).  A biological phantom for evaluation of CT image reconstruction algorithms.  SPIE Medical Imaging.  903307-903307.
  • Otake Y, Stayman J, Zbijewski W, Murphy R, Kutzer M, Taylor R, Siewerdsen J, Armand M (2013).  Model-based cone-beam CT reconstruction for image-guided minimally invasive treatment of hip osteolysis.  SPIE Medical Imaging.  86710Y-86710Y.
  • Wang AS, Schafer S, Stayman J, Otake Y, Sussman MS, Khanna, A Jay , Gallia GL, Siewerdsen JH (2013).  Soft-tissue imaging in low-dose, C-arm cone-beam CT using statistical image reconstruction.  SPIE Medical Imaging.  86681F-86681F.
  • Otake Y, Stayman J, Zbijewski W, Murphy RJ, Kutzer MD, Taylor R, Siewerdsen JH, Armand M (2013).  Model-Based Cone-Beam CT Reconstruction for Image-Guided Minimally Invasive Treatment of Hip Osteolysis.  SPIE Medical Imaging Conference.  8671.
  • Schafer S, Wang A, Otake Y, Stayman J, Zbijewski W, Kleinszig G, Xia X, Gallia GL, Siewerdsen JH (2013).  Intraoperative imaging for patient safety and QA: detection of intracranial hemorrhage using C-arm cone-beam CT.  SPIE Medical Imaging.  86711X-86711X.
  • Zbijewski W, Gang G, Wang A, Stayman J, Taguchi K, Carrino J, Siewerdsen J (2013).  Noise reduction in material decomposition for low-dose dual-energy cone-beam CT.  SPIE Medical Imaging.  866819-866819.
  • Stayman J, Dang H, Otake Y, Zbijewski W, Noble J, Dawant B, Labadie R, Carey J, Siewerdsen J (2013).  Overcoming nonlinear partial volume effects in known-component reconstruction of cochlear implants.  SPIE Medical Imaging.  86681L-86681L.
  • Stayman J, Siewerdsen JH (2013).  Task-Based Trajectories in Iteratively Reconstructed Interventional Cone-Beam CT.  The 12th International Meeting on Fully Three-Dimensional Image Reconstruction in Radiology and Nuclear Medicine.  257-260.
  • Muhit A, Arora S, Ogawa M, Ding Y, Zbijewski W, Stayman J, Thawait G, Packard N, Senn R, Yang D, others (2013).  Peripheral quantitative CT (pQCT) using a dedicated extremity cone-beam CT scanner.  SPIE Medical Imaging.  867203-867203.
  • Nithiananthan S, Uneri A, Schafer S, Mirota D, Otake Y, Stayman J, Zbijewski W, Khanna A, Reh D, Gallia G, others (2013).  Deformable image registration with content mismatch: a demons variant to account for added material and surgical devices in the target image.  SPIE Medical Imaging.  86712A-86712A.
  • Stutman D, Stayman J, Finkenthal M, Siewerdsen J (2013).  High energy x-ray phase-contrast imaging using glancing angle grating interferometers.  SPIE Medical Imaging.  866814-866814.
  • Stayman J, Otake Y, Schafer S, Khanna A, Prince J, Siewerdsen J (2012).  Model-based reconstruction of objects with inexactly known components.  SPIE Medical Imaging.  83131S-83131S.
  • Stayman J, Prince J, Siewerdsen J (2012).  Information Source Mapping in Prior-Image-Based Reconstruction.  Annual Meeting of the American Association of Physicists, Medical Physics.  39(6).  3891-3891.
  • Gang G, Zbijewski W, Stayman J, Carrino J, Siewerdsen J (2012).  Theoretical framework for the dual-energy cone-beam CT noise-power spectrum NEQ and tasked-based detectability index.  SPIE Medical Imaging.  83131J-83131J.
  • Ding Y, Siewerdsen JH, Stayman J (2012).  Incorporation of noise and prior images in penalized-likelihood reconstruction of sparse data.  SPIE Medical Imaging.  831324-831324.
  • Reaungamornrat S, Otake Y, Uneri A, Schafer S, Mirota DJ, Nithiananthan S, Stayman J, Khanna AJ, Reh DD, Gallia GL, Taylor R, Siewerdsen JH (2012).  Tracker-on-C for cone-beam CT-guided surgery: evaluation of geometric accuracy and clinical applications.  SPIE Medical Imaging: Image-Guided Procedures, Robotic Interventions and Modeling.  8316.  8316-8.
  • Schafer S, Otake Y, Uneri A, Mirota DJ, Nithiananthan S, Stayman J, Zbijewski W, Kleinszig G, Graumann R, Sussman M, others (2012).  High-performance C-arm cone-beam CT guidance of thoracic surgery.  SPIE Medical Imaging.  83161I-83161I.
  • Otake Y, Schafer S, Stayman J, Zbijewski W, Kleinszig G, Graumann R, Khanna A, Siewerdsen J (2012).  Automatic localization of target vertebrae in spine surgery using fast CT-to-fluoroscopy (3D-2D) image registration.  SPIE Medical Imaging.  83160N-83160N.
  • Uneri A, Nithiananthan S, Schafer S, Otake Y, Stayman J, Kleinszig G, Sussman MS, Taylor R, Prince J, Siewerdsen JH (2012).  Deformable registration of the inflated and deflated lung for cone-beam CT-guided thoracic surgery.  SPIE Medical Imaging.  831602-831602.
  • Lee J, Stayman J, Otake Y, Schafer S, Zbijewski W, Khanna A, Prince J, Siewerdsen J (2012).  Incorporation of prior knowledge for region of change imaging from sparse scan data in image-guided surgery.  SPIE Medical Imaging.  831603-831603.
  • Reaungamornrat S, Otake Y, Uneri A, Schafer S, Stayman J, Zbijewski W, Mirota DJ, Yoo J, Nithiananthan S, Khanna, A J , Taylor R, Siewerdsen JH (2011).  Tracker-On-C: A Novel Tracker Configuration for Image-Guided Therapy using a Mobile C-arm.  Computer Assisted Radiology and Surgery (CARS).  135-135.
  • Zbijewski W, De Jean P, Prakash P, Ding Y, Stayman J, Packard N, Senn R, Yang D, Yorkston J, Machado A, others (2011).  Design and optimization of a dedicated cone-beam CT system for musculoskeletal extremities imaging.  SPIE Medical Imaging.  796104-796104.
  • Nithiananthan S, Mirota D, Uneri A, Schafer S, Otake Y, Stayman J, Siewerdsen J (2011).  Incorporating tissue excision in deformable image registration: a modified demons algorithm for cone-beam CT-guided surgery.  SPIE Medical Imaging.  796404-796404.
  • Stayman J, Zbijewski W, Otake Y, Uneri A, Schafer S, Lee J, Prince J, Siewerdsen J (2011).  Penalized-likelihood reconstruction for sparse data acquisitions with unregistered prior images and compressed sensing penalties.  SPIE Medical Imaging.  79611L-79611L.
  • Stayman J, Zbijewski W, Otake Y, Schafer S, Lee J, Prince J, Siewerdsen J (2011).  Using Prior Images with Registration in Penalized Likelihood Estimation for CT with Sparse Data.  Annual Meeting of the AAPM, In Medical Physics.  38(6).  3797-3797.
  • Stayman J, Otake Y, Prince J, Siewerdsen JH (2011).  Likelihood-Based Known-Component Reconstruction in Computed Tomography.  Annual Meeting of Radiological Society of North America.
  • Uneri A, Schafer S, Mirota D, Nithiananthan S, Otake Y, Reaungamornrat S, Yoo J, Stayman J, Reh D, Gallia G, Khanna AJ, Hager G, Taylor R, Kleinszig G, Siewerdsen JH (2011).  Architecture of a High-Performance Surgical Guidance System Based on C-Arm Cone-Beam CT: Software Platform for Technical Integration and Clinical Translation.  SPIE Medical Imaging: Visualization, Image-Guided Procedures, and Modeling.  7964-74.
  • Uneri A, Schafer S, Mirota D, Nithiananthan S, Otake Y, Reaungamornrat S, Yoo J, Stayman J, Reh D, Gallia GL, others (2011).  Architecture of a high-performance surgical guidance system based on C-arm cone-beam CT: software platform for technical integration and clinical translation.  SPIE Medical Imaging.  796422-796422.
  • Stayman J, Otake Y, Uneri A, Prince J, Siewerdsen J (2011).  Model-Based Known Component Reconstruction for Computed Tomography.  Annual Meeting of the AAPM, In Medical Physics.  38(6).  3796-3796.
  • Gang G, Lee J, Stayman J, Tward D, Zbijewski W, Prince J, Siewerdsen J (2010).  The generalized NEQ and detectability index for tomosynthesis and cone-beam CT: From cascaded systems analysis to human observers.  SPIE Medical Imaging.  76220Y-76220Y.
  • Kreucher C, Stayman J, Shapo B, Stuff M (2010).  Exploiting a constellation of narrowband RF sensors to detect and track moving targets.  Signals, Systems and Computers (ASILOMAR), 2010 Conference Record of the Forty Fourth Asilomar Conference on.  1966-1970.
  • Stayman J, Subotic N, Buller W (2009).  An analysis of coded aperture acquisition and reconstruction using multi-frame code sequences for relaxed optical design constraints.  SPIE Optical Engineering+ Applications.  74680D-74680D.
  • Naik V, Stayman J (2008).  Interactive intraoperative imaging and guidance with a pre-registered CT volume.  Nuclear Science Symposium Conference Record, 2008. NSS'08. IEEE.  3886-3888.
  • Jacobson MW, Stayman J (2008).  Compensating for head motion in slowly-rotating cone beam CT systems with optimization transfer based motion estimation.  Nuclear Science Symposium Conference Record, 2008. NSS'08. IEEE.  5240-5245.
  • Stayman J (2007).  Maximum likelihood resolution recovery in X-ray CT with an extended focal spot.  Nuclear Science Symposium Conference Record, 2007. NSS'07. IEEE.  4.  2644-2645.
  • Zbijewski W, Stayman J (2007).  xCAT: A mobile, flat-panel volumetric X-ray CT for head and neck imaging.  Nuclear Science Symposium Conference Record, 2007. NSS'07. IEEE.  4.  2985-2986.
  • Stayman J, Fessler JA (2002).  Fast methods for approximation of resolution and covariance for SPECT.  Nuclear Science Symposium Conference Record, 2002 IEEE.  2.  786-788.
  • Stayman J, Fessler JA (2001).  Nonnegative definite quadratic penalty design for penalized-likelihood reconstruction.  Nuclear Science Symposium Conference Record, 2001 IEEE.  2.  1060-1063.
  • Fessler JA, Stayman J (1998).  Spatially-variant roughness penalty design for uniform resolution in penalized-likelihood image reconstruction.  Image Processing, 1998. ICIP 98. Proceedings. 1998 International Conference on.  2.  685-689.
  • Barren RL, Larson EC, Stayman J, Ward DG (1995).  Analytical control synthesis for adaptive flying-qualities adherence.  Aerospace and Electronics Conference, 1995. NAECON 1995., Proceedings of the IEEE 1995 National.  1.  523-530.
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