Feinberg, Andrew

Bloomberg Distinguished Professor
Som Medicine

Rangos 570
(410) 614-3489
afeinberg@jhu.edu

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Illustration of DNA

Physical Epigenetics now offered at Johns Hopkins

December 20, 2016

A new course in physical epigenetics will be available at Johns Hopkins in spring 2017. Students will have the opportunity to critically review cutting edge research papers, research and analyze genomic data, learn about different stages of epigenetic analysis, and draw their own conclusions using modern computational tools.

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WSE In The News
09/07/16: What are the long-term health effects of living in space? NASA is studying twins Mark and Scott Kelly to find out, BME’s Andrew Feinberg, Los Angeles Times

September 8, 2016

The Los Angeles Times reports on the NASA Twins Study, which is exploring the long-term health effects of living in space. Andrew Feinberg, Bloomberg Distinguished Professor of mental health and biomedical engineering, is leading a study on the epigentic markers of twins Mark and Scott Kelly.

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About

Education
  • Doctor of Medicine 1976, JOHNS HOPKINS SCHOOL OF MEDICINE
  • Bachelor of Arts 1973, The Johns Hopkins University
Experience
  • 2013 - Present:  JOINT/SECONDARY FACULTY, SOM Oncology Center
  • 2011 - 2019:  Professor, SPH Biostatistics
  • 2009 - Present:  Joint, SOM Psychiatry and Behavioral Sciences
  • 1994 - Present:  Joint, SOM Molecular Biology and Genetics
  • 1994 - Present:  Professor, SOM Oncology Center

Publications

Journal Articles
  • Kular L, Liu Y, Ruhrmann S, Zheleznyakova G, Marabita F, Gomez-Cabrero D, James T, Ewing E, Lindén M, Górnikiewicz B, Aeinehband S, Stridh P, Link J, Andlauer TFM, Gasperi C, Wiendl H, Zipp F, Gold R, Tackenberg B, Weber F, Hemmer B, Strauch K, Heilmann-Heimbach S, Rawal R, Schminke U, Schmidt CO, Kacprowski T, Franke A, Laudes M, Dilthey AT, Celius EG, Søndergaard HB, Tegnér J, Harbo HF, Oturai AB, Olafsson S, Eggertsson HP, Halldorsson BV, Hjaltason H, Olafsson E, Jonsdottir I, Stefansson K, Olsson T, Piehl F, Ekström TJ, Kockum I, Feinberg AP, Jagodic M (2018).  DNA methylation as a mediator of HLA-DRB1 15:01 and a protective variant in multiple sclerosis.  Nature Communications.  9(1).
  • Barbeira AN, Dickinson SP, Bonazzola R, Zheng J, Wheeler HE, Torres JM, Torstenson ES, Shah KP, Garcia T, Edwards TL, Stahl EA, Huckins LM, Aguet F, Ardlie KG, Cummings BB, Gelfand ET, Getz G, Hadley K, Handsaker RE, Huang KH, Kashin S, Karczewski KJ, Lek M, Li X, MacArthur DG, Nedzel JL, Nguyen DT, Noble MS, Segrè AV, Trowbridge CA, Tukiainen T, Abell NS, Balliu B, Barshir R, Basha O, Battle A, Bogu GK, Brown A, Brown CD, Castel SE, Chen LS, Chiang C, Conrad DF, Damani FN, Davis JR, Delaneau O, Dermitzakis ET, Engelhardt BE, Eskin E, Ferreira PG, Frésard L, Gamazon ER, Garrido-Martín D, Gewirtz ADH, Gliner G, Gloudemans MJ, Guigo R, Hall IM, Han B, He Y, Hormozdiari F, Howald C, Jo B, Kang EY, Kim Y, Kim-Hellmuth S, Lappalainen T, Li G, Li X, Liu B, Mangul S, McCarthy MI, McDowell IC, Mohammadi P, Monlong J, Montgomery SB, Muñoz-Aguirre M, Ndungu AW, Nobel AB, Oliva M, Ongen H, Palowitch JJ, Panousis N, Papasaikas P, Park Y, Parsana P, Payne AJ, Peterson CB, Quan J, Reverter F...Im HK (2018).  Exploring the phenotypic consequences of tissue specific gene expression variation inferred from GWAS summary statistics.  Nature Communications.  9(1).
  • Vanaja KG, Timp W, Feinberg AP, Levchenko A (2018).  A Loss of Epigenetic Control Can Promote Cell Death through Reversing the Balance of Pathways in a Signaling Network.  Molecular Cell.  72(1).
  • Andrews SV, Sheppard B, Windham GC, Schieve LA, Schendel DE, Croen LA, Chopra P, Alisch RS, Newschaffer CJ, Warren ST, Feinberg AP, Fallin MD, Ladd-Acosta C (2018).  Case-control meta-analysis of blood DNA methylation and autism spectrum disorder.  Molecular Autism.  9(1).
  • Feinberg AP (2018).  The key role of epigenetics in human disease prevention and mitigation.  New England Journal of Medicine.  378(14).
  • Jenkinson G, Abante J, Feinberg AP, Goutsias J (2018).  An information-theoretic approach to the modeling and analysis of whole-genome bisulfite sequencing data.  BMC Bioinformatics.  19(1).
  • Barrington WT, Wulfridge P, Wells AE, Rojas CM, Howe SYF, Perry A, Hua K, Pellizzon MA, Hansen KD, Voy BH, Bennett BJ, Pomp D, Feinberg AP, Threadgill DW (2018).  Improving metabolic health through precision dietetics in mice.  Genetics.  208(1).
  • Wilton R, Li X, Feinberg AP, Szalay AS (2018).  Arioc: GPU-accelerated alignment of short bisulfite-treated reads.  Bioinformatics.  34(15).
  • Marabita F, Almgren M, Sjöholm LK, Kular L, Liu Y, James T, Kiss NB, Feinberg AP, Olsson T, Kockum I, Alfredsson L, Ekström TJ, Jagodic M (2017).  Smoking induces DNA methylation changes in Multiple Sclerosis patients with exposure-response relationship.  Scientific Reports.  7(1).
  • Andrews SV, Ellis SE, Bakulski KM, Sheppard B, Croen LA, Hertz-Picciotto I, Newschaffer CJ, Feinberg AP, Arking DE, Ladd-Acosta C, Fallin MD (2017).  Cross-tissue integration of genetic and epigenetic data offers insight into autism spectrum disorder.  Nature Communications.  8(1).
  • Stranger BE, Brigham LE, Hasz R, Hunter M, Johns C, Johnson M, Kopen G, Leinweber WF, Lonsdale JT, McDonald A, Mestichelli B, Myer K, Roe B, Salvatore M, Shad S, Thomas JA, Walters G, Washington M, Wheeler J, Bridge J, Foster BA, Gillard BM, Karasik E, Kumar R, Miklos M, Moser MT, Jewell SD, Montroy RG, Rohrer DC, Valley DR, Davis DA, Mash DC, Gould SE, Guan P, Koester S, Little AR, Martin C, Moore HM, Rao A, Struewing JP, Volpi S, Hansen KD, Hickey PF, Rizzardi LF, Hou L, Liu Y, Molinie B, Park Y, Rinaldi N, Wang L, Wittenberghe N, Claussnitzer M, Gelfand ET, Li Q, Linder S, Zhang R, Smith KS, Tsang EK, Chen LS, Demanelis K, Doherty JA, Farzana J, Kibriya MG, Jiang L, Lin S, Wang M, Jian R, Li X, Chan J, Bates D, Diegel M, Halow J, Haugen E, Johnson A, Kaul R, Lee K, Maurano MT, Nelson J, Neri FJ, Sandstrom R, Fernando MS, Linke C, Oliva M, Skol A, Wu F, Akey JM, Feinberg AP, Billy JL, Pierce BL, Stamatoyannopoulos JA, Tang H, Ardlie KG, Kellis M, Snyder MP, Montgomery SB (2017).  Enhancing GTEx by bridging the gaps between genotype, gene expression, and disease.  Nature Genetics.  49(12).
  • Li X, Kim Y, Tsang EK, Davis JR, Damani FN, Chiang C, Hess GT, Zappala Z, Strober BJ, Scott AJ, Li A, Ganna A, Bassik MC, Merker JD, Aguet F, Ardlie KG, Cummings BB, Gelfand ET, Getz G, Hadley K, Handsaker RE, Huang KH, Kashin S, Karczewski KJ, Lek M, Li X, MacArthur DG, Nedzel JL, Nguyen DT, Noble MS, Segrè AV, Trowbridge CA, Tukiainen T, Abell NS, Balliu B, Barshir R, Basha O, Bogu GK, Brown A, Brown CD, Castel SE, Chen LS, Conrad DF, Cox NJ, Delaneau O, Dermitzakis ET, Engelhardt BE, Eskin E, Ferreira PG, Frésard L, Gamazon ER, Garrido-Martín D, Gewirtz ADH, Gliner G, Gloudemans MJ, Guigo R, Hall IM, Han B, He Y, Hormozdiari F, Howald C, Im HK, Jo B, Kang EY, Kim-Hellmuth S, Lappalainen T, Li G, Liu B, Mangul S, McCarthy MI, McDowell IC, Mohammadi P, Monlong J, Muñoz-Aguirre M, Ndungu AW, Nicolae DL, Nobel AB, Oliva M, Ongen H, Palowitch JJ, Panousis N, Papasaikas P, Park Y, Parsana P, Payne AJ, Peterson CB, Quan J, Reverter F, Sabatti C, Saha A, Sammeth M, Shabalin ...Montgomery SB (2017).  The impact of rare variation on gene expression across tissues.  Nature.  550(7675).
  • Tukiainen T, Villani A-C, Yen A, Rivas MA, Marshall JL, Satija R, Aguirre M, Gauthier L, Fleharty M, Kirby A, Cummings BB, Castel SE, Karczewski KJ, Aguet F, Byrnes A, Gelfand ET, Getz G, Hadley K, Handsaker RE, Huang KH, Kashin S, Lek M, Li X, Nedzel JL, Nguyen DT, Noble MS, Segrè AV, Trowbridge CA, Abell NS, Balliu B, Barshir R, Basha O, Battle A, Bogu GK, Brown A, Brown CD, Chen LS, Chiang C, Conrad DF, Cox NJ, Damani FN, Davis JR, Delaneau O, Dermitzakis ET, Engelhardt BE, Eskin E, Ferreira PG, Frésard L, Gamazon ER, Garrido-Martín D, Gewirtz ADH, Gliner G, Gloudemans MJ, Guigo R, Hall IM, Han B, He Y, Hormozdiari F, Howald C, Im HK, Jo B, Kang EY, Kim Y, Kim-Hellmuth S, Lappalainen T, Li G, Li X, Liu B, Mangul S, McCarthy MI, McDowell IC, Mohammadi P, Monlong J, Montgomery SB, Muñoz-Aguirre M, Ndungu AW, Nicolae DL, Nobel AB, Oliva M, Ongen H, Palowitch JJ, Panousis N, Papasaikas P, Park Y, Parsana P, Payne AJ, Peterson CB, Quan J, Reverter F, Sabatti C, Saha A, Sam...MacArthur DG (2017).  Landscape of X chromosome inactivation across human tissues.  Nature.  550(7675).
  • Tan MH, Li Q, Shanmugam R, Piskol R, Kohler J, Young AN, Liu KI, Zhang R, Ramaswami G, Ariyoshi K, Gupte A, Keegan LP, George CX, Ramu A, Huang N, Pollina EA, Leeman DS, Rustighi A, Goh YPS, Aguet F, Ardlie KG, Cummings BB, Gelfand ET, Getz G, Hadley K, Handsaker RE, Huang KH, Kashin S, Karczewski KJ, Lek M, Li X, MacArthur DG, Nedzel JL, Nguyen DT, Noble MS, Segrè AV, Trowbridge CA, Tukiainen T, Abell NS, Balliu B, Barshir R, Basha O, Battle A, Bogu GK, Brown A, Brown CD, Castel SE, Chen LS, Chiang C, Conrad DF, Cox NJ, Damani FN, Davis JR, Delaneau O, Dermitzakis ET, Engelhardt BE, Eskin E, Ferreira PG, Frésard L, Gamazon ER, Garrido-Martín D, Gewirtz ADH, Gliner G, Gloudemans MJ, Guigo R, Hall IM, Han B, He Y, Hormozdiari F, Howald C, Im HK, Jo B, Kang EY, Kim Y, Kim-Hellmuth S, Lappalainen T, Li G, Li X, Liu B, Mangul S, McCarthy MI, McDowell IC, Mohammadi P, Monlong J, Montgomery SB, Muñoz-Aguirre M, Ndungu AW, Nicolae DL, Nobel AB, Oliva M, Ongen H, Palowitch JJ, Panousis...Li JB (2017).  Dynamic landscape and regulation of RNA editing in mammals.  Nature.  550(7675).
  • Aguet F, Brown AA, Castel SE, Davis JR, He Y, Jo B, Mohammadi P, Park Y, Parsana P, Segrè AV, Strober BJ, Zappala Z, Cummings BB, Gelfand ET, Hadley K, Huang KH, Lek M, Li X, Nedzel JL, Nguyen DY, Noble MS, Sullivan TJ, Tukiainen T, MacArthur DG, Getz G, Addington A, Guan P, Koester S, Little AR, Lockhart NC, Moore HM, Rao A, Struewing JP, Volpi S, Brigham LE, Hasz R, Hunter M, Johns C, Johnson M, Kopen G, Leinweber WF, Lonsdale JT, McDonald A, Mestichelli B, Myer K, Roe B, Salvatore M, Shad S, Thomas JA, Walters G, Washington M, Wheeler J, Bridge J, Foster BA, Gillard BM, Karasik E, Kumar R, Miklos M, Moser MT, Jewell SD, Montroy RG, Rohrer DC, Valley D, Mash DC, Davis DA, Sobin L, Barcus ME, Branton PA, Abell NS, Balliu B, Delaneau O, Frésard L, Gamazon ER, Garrido-Martín D, Gewirtz ADH, Gliner G, Gloudemans MJ, Han B, He AZ, Hormozdiari F, Li X, Liu B, Kang EY, McDowell IC, Ongen H, Palowitch JJ, Peterson CB, Quon G, Ripke S, Saha A, Shabalin AA, Shimko TC, Sul JH, Teran NA,...Zhu J (2017).  Genetic effects on gene expression across human tissues.  Nature.  550(7675).
  • Jenkinson G, Pujadas E, Goutsias J, Feinberg AP (2017).  Potential energy landscapes identify the information-theoretic nature of the epigenome.  Nature Genetics.  49(5).
  • Cummings BB, Marshall JL, Tukiainen T, Lek M, Donkervoort S, Foley AR, Bolduc V, Waddell LB, Sandaradura SA, O'Grady GL, Estrella E, Reddy HM, Zhao F, Weisburd B, Karczewski KJ, O'Donnell-Luria AH, Birnbaum D, Sarkozy A, Hu Y, Gonorazky H, Claeys K, Joshi H, Bournazos A, Oates EC, Ghaoui R, Davis MR, Laing NG, Topf A, Kang PB, Beggs AH, North KN, Straub V, Dowling JJ, Muntoni F, Clarke NF, Cooper ST, Bönnemann CG, MacArthur DG, Ardlie KG, Getz G, Gelfand ET, Segrè AV, Aguet F, Sullivan TJ, Li X, Nedzel JL, Trowbridge CA, Hadley K, Huang KH, Noble MS, Nguyen DT, Nobel AB, Wright FA, Shabalin AA, Palowitch JJ, Zhou Y-H, Dermitzakis ET, McCarthy MI, Payne AJ, Lappalainen T, Castel S, Kim-Hellmuth S, Mohammadi P, Battle A, Parsana P, Mostafavi S, Brown A, Ongen H, Delaneau O, Panousis N, Howald C, Van De Bunt M, Guigo R, Monlong J, Reverter F, Garrido D, Munoz M, Bogu G, Sodaei R, Papasaikas P, Ndungu AW, Montgomery SB, Li X, Fresard L, Davis JR, Tsang EK, Zappala Z, Abell NS, G...Zaugg JB (2017).  Improving genetic diagnosis in Mendelian disease with transcriptome sequencing.  Science Translational Medicine.  9(386).
  • Meng W, Zhu Z, Jiang X, Too CL, Uebe S, Jagodic M, Kockum I, Murad S, Ferrucci L, Alfredsson L, Zou H, Klareskog L, Feinberg AP, Ekström TJ, Padyukov L, Liu Y (2017).  DNA methylation mediates genotype and smoking interaction in the development of anti-citrullinated peptide antibody-positive rheumatoid arthritis.  Arthritis Research and Therapy.  19(1).
  • McDonald OG, Li X, Saunders T, Tryggvadottir R, Mentch SJ, Warmoes MO, Word AE, Carrer A, Salz TH, Natsume S, Stauffer KM, Makohon-Moore A, Zhong Y, Wu H, Wellen KE, Locasale JW, Iacobuzio-Donahue CA, Feinberg AP (2017).  Epigenomic reprogramming during pancreatic cancer progression links anabolic glucose metabolism to distant metastasis.  Nature Genetics.  49(3).
  • Mendelson MM, Marioni RE, Joehanes R, Liu C, Hedman ÅK, Aslibekyan S, Demerath EW, Guan W, Zhi D, Yao C, Huan T, Willinger C, Chen B, Courchesne P, Multhaup M, Irvin MR, Cohain A, Schadt EE, Grove ML, Bressler J, North K, Sundström J, Gustafsson S, Shah S, McRae AF, Harris SE, Gibson J, Redmond P, Corley J, Murphy L, Starr JM, Kleinbrink E, Lipovich L, Visscher PM, Wray NR, Krauss RM, Fallin D, Feinberg A, Absher DM, Fornage M, Pankow JS, Lind L, Fox C, Ingelsson E, Arnett DK, Boerwinkle E, Liang L, Levy D, Deary IJ (2017).  Association of Body Mass Index with DNA Methylation and Gene Expression in Blood Cells and Relations to Cardiometabolic Disease: A Mendelian Randomization Approach.  PLoS Medicine.  14(1).
  • Ligthart S, Marzi C, Aslibekyan S, Mendelson MM, Conneely KN, Tanaka T, Colicino E, Waite LL, Joehanes R, Guan W, Brody JA, Elks C, Marioni R, Jhun MA, Agha G, Bressler J, Ward-Caviness CK, Chen BH, Huan T, Bakulski K, Salfati EL, Fiorito G, Wahl S, Schramm K, Sha J, Hernandez DG, Just AC, Smith JA, Sotoodehnia N, Pilling LC, Pankow JS, Tsao PS, Liu C, Zhao W, Guarrera S, Michopoulos VJ, Smith AK, Peters MJ, Melzer D, Vokonas P, Fornage M, Prokisch H, Bis JC, Chu AY, Herder C, Grallert H, Yao C, Shah S, McRae AF, Lin H, Horvath S, Fallin D, Hofman A, Wareham NJ, Wiggins KL, Feinberg AP, Starr JM, Visscher PM, Murabito JM, Kardia SLR, Absher DM, Binder EB, Singleton AB, Bandinelli S, Peters A, Waldenberger M, Matullo G, Schwartz JD, Demerath EW, Uitterlinden AG, Meurs JBJ, Franco OH, Chen Y-DI, Levy D, Turner ST, Deary IJ, Ressler KJ, Dupuis J, Ferrucci L, Ong KK, Assimes TL, Boerwinkle E, Koenig W, Arnett DK, Baccarelli AA, Benjamin EJ, Dehghan A (2016).  DNA methylation signatures of chronic low-grade inflammation are associated with complex diseases.  Genome Biology.  17(1).
  • Andrews SV, Ladd-Acosta C, Feinberg AP, Hansen KD, Fallin MD (2016).  "Gap hunting" to characterize clustered probe signals in Illumina methylation array data.  Epigenetics and Chromatin.  9(1).
  • Li X, Liu Y, Salz T, Hansen KD, Feinberg A (2016).  Whole-genome analysis of the methylome and hydroxymethylome in normal and malignant lung and liver.  Genome Research.  26(12).
  • Gomez-Cabrero D, Almgren M, Sjöholm LK, Hensvold AH, Ringh MV, Tryggvadottir R, Kere J, Scheynius A, Acevedo N, Reinius L, Taub MA, Montano C, Aryee MJ, Feinberg JI, Feinberg AP, Tegnér J, Klareskog L, Catrina AI, Ekström TJ (2016).  High-specificity bioinformatics framework for epigenomic profiling of discordant twins reveals specific and shared markers for ACPA and ACPA-positive rheumatoid arthritis.  Genome Medicine.  8(1).
  • Bakulski KM, Feinberg JI, Andrews SV, Yang J, Brown S, L. McKenney S, Witter F, Walston J, Feinberg AP, Fallin MD (2016).  DNA methylation of cord blood cell types: Applications for mixed cell birth studies.  Epigenetics.  11(5).
  • Montano C, Taub MA, Jaffe A, Briem E, Feinberg JI, Trygvadottir R, Idrizi A, Runarsson A, Berndsen B, Gur RC, Moore TM, Perry RT, Fugman D, Sabunciyan S, Yolken RH, Hyde TM, Kleinman JE, Sobell JL, Pato CN, Pato MT, Go RC, Nimgaonkar V, Weinberger DR, Braff D, Gur RE, Fallin MD, Feinberg AP (2016).  Association of DNA methylation differences with schizophrenia in an epigenome-wide association study.  JAMA Psychiatry.  73(5).
  • Feinberg AP, Koldobskiy MA, Göndör A (2016).  Epigenetic modulators, modifiers and mediators in cancer aetiology and progression.  Nature Reviews Genetics.  17(5).
  • Joubert BR, Felix JF, Yousefi P, Bakulski KM, Just AC, Breton C, Reese SE, Markunas CA, Richmond RC, Xu C-J, Küpers LK, Oh SS, Hoyo C, Gruzieva O, Söderhäll C, Salas LA, Baïz N, Zhang H, Lepeule J, Ruiz C, Ligthart S, Wang T, Taylor JA, Duijts L, Sharp GC, Jankipersadsing SA, Nilsen RM, Vaez A, Fallin MD, Hu D, Litonjua AA, Fuemmeler BF, Huen K, Kere J, Kull I, Munthe-Kaas MC, Gehring U, Bustamante M, Saurel-Coubizolles MJ, Quraishi BM, Ren J, Tost J, Gonzalez JR, Peters MJ, Håberg SE, Xu Z, Van Meurs JB, Gaunt TR, Kerkhof M, Corpeleijn E, Feinberg AP, Eng C, Baccarelli AA, Benjamin Neelon SE, Bradman A, Merid SK, Bergström A, Herceg Z, Hernandez-Vargas H, Brunekreef B, Pinart M, Heude B, Ewart S, Yao J, Lemonnier N, Franco OH, Wu MC, Hofman A, McArdle W, Van Der Vlies P, Falahi F, Gillman MW, Barcellos LF, Kumar A, Wickman M, Guerra S, Charles M-A, Holloway J, Auffray C, Tiemeier HW, Smith GD, Postma D, Hivert M-F, Eskenazi B, Vrijheid M, Arshad H, Antó JM, Dehghan A, Karm...London SJ (2016).  DNA Methylation in Newborns and Maternal Smoking in Pregnancy: Genome-wide Consortium Meta-analysis.  American Journal of Human Genetics.  98(4).
  • Rizzardi LF, Kunz H, Rubins K, Chouker A, Quiriarte H, Sams C, Crucian BE, Feinberg AP (2016).  Evaluation of techniques for performing cellular isolation and preservation during microgravity conditions.  npj Microgravity.  2.
  • McIntyre ABR, Rizzardi L, Yu AM, Alexander N, Rosen GL, Botkin DJ, Stahl SE, John KK, Castro-Wallace SL, McGrath K, Burton AS, Feinberg AP, Mason CE (2016).  Nanopore sequencing in microgravity.  npj Microgravity.  2.
  • Ladd-Acosta C, Shu C, Lee BK, Gidaya N, Singer A, Schieve LA, Schendel DE, Jones N, Daniels JL, Windham GC, Newschaffer CJ, Croen LA, Feinberg AP, Daniele Fallin M (2016).  Presence of an epigenetic signature of prenatal cigarette smoke exposure in childhood.  Environmental Research.  144.
  • Chen BH, Marioni RE, Colicino E, Peters MJ, Ward-Caviness CK, Tsai PC, Roetker NS, Just AC, Demerath EW, Guan W, Bressler J, Fornage M, Studenski S, Vandiver AR, Moore AZ, Tanaka T, Kiel DP, Liang L, Vokonas P, Schwartz J, Lunetta KL, Murabito JM, Bandinelli S, Hernandez DG, Melzer D, Nalls M, Pilling LC, Price TR, Singleton AB, Gieger C, Holle R, Kretschmer A, Kronenberg F, Kunze S, Linseisen J, Meisinger C, Rathmann W, Waldenberger M, Visscher PM, Shah S, Wray NR, McRae AF, Franco OH, Hofman A, Uitterlinden AG, Absher D, Assimes T, Levine ME, Lu AT, Tsao PS, Hou L, Manson JAE, Carty CL, LaCroix AZ, Reiner AP, Spector TD, Feinberg AP, Levy D, Baccarelli A, Meurs Jv, Bell JT, Peters A, Deary IJ, Pankow JS, Ferrucci L, Horvath S (2016).  DNA methylation-based measures of biological age: Meta-analysis predicting time to death.  Aging.  8(9).
  • Vandiver AR, Idrizi A, Rizzardi L, Feinberg AP, Hansen KD (2015).  DNA methylation is stable during replication and cell cycle arrest.  Scientific Reports.  5.
  • Jung N, Dai B, Gentles AJ, Majeti R, Feinberg AP (2015).  An LSC epigenetic signature is largely mutation independent and implicates the HOXA cluster in AML pathogenesis.  Nature Communications.  6.
  • Sinha S, Thomas D, Yu L, Gentles AJ, Jung N, Corces-Zimmerman MR, Chan SM, Reinisch A, Feinberg AP, Dill DL, Majeti R (2015).  Mutant WT1 is associated with DNA hypermethylation of PRC2 targets in AML and responds to EZH2 inhibition.  Blood.  125(2).
  • Feinberg JI, Bakulski KM, Jaffe AE, Tryggvadottir R, Brown SC, Goldman LR, Croen LA, Hertz-Picciotto I, Newschaffer CJ, Daniele Fallin M, Feinberg AP (2015).  Paternal sperm DNA methylation associated with early signs of autism risk in an autism-enriched cohort.  International Journal of Epidemiology.  44(4).
  • Bakulski KM, Lee HJ, Feinberg JI, Wells EM, Brown S, Herbstman JB, Witter FR, Halden RU, Caldwell K, Mortensen ME, Jaffe AE, Moye J, Caulfield LE, Pan Y, Goldman LR, Feinberg AP, Daniele Fallin M (2015).  Prenatal mercury concentration is associated with changes in DNA methylation at TCEANC2 in newborns.  International Journal of Epidemiology.  44(4).
  • Vandiver AR, Irizarry RA, Hansen KD, Garza LA, Runarsson A, Li X, Chien AL, Wang TS, Leung SG, Kang S, Feinberg AP (2015).  Age and sun exposure-related widespread genomic blocks of hypomethylation in nonmalignant skin.  Genome Biology.  16(1).
  • Marioni RE, Shah S, McRae AF, Chen BH, Colicino E, Harris SE, Gibson J, Henders AK, Redmond P, Cox SR, Pattie A, Corley J, Murphy L, Martin NG, Montgomery GW, Feinberg AP, Fallin MD, Multhaup ML, Jaffe AE, Joehanes R, Schwartz J, Just AC, Lunetta KL, Murabito JM, Starr JM, Horvath S, Baccarelli AA, Levy D, Visscher PM, Wray NR, Deary IJ (2015).  DNA methylation age of blood predicts all-cause mortality in later life.  Genome Biology.  16(1).
  • Multhaup ML, Seldin MM, Jaffe AE, Lei X, Kirchner H, Mondal P, Li Y, Rodriguez V, Drong A, Hussain M, Lindgren C, McCarthy M, Näslund E, Zierath JR, Wong GW, Feinberg AP (2015).  Mouse-human experimental epigenetic analysis unmasks dietary targets and genetic liability for diabetic phenotypes.  Cell Metabolism.  21(1).
  • Schlaeger TM, Daheron L, Brickler TR, Entwisle S, Chan K, Cianci A, DeVine A, Ettenger A, Fitzgerald K, Godfrey M, Gupta D, McPherson J, Malwadkar P, Gupta M, Bell B, Doi A, Jung N, Li X, Lynes MS, Brookes E, Cherry ABC, Demirbas D, Tsankov AM, Zon LI, Rubin LL, Feinberg AP, Meissner A, Cowan CA, Daley GQ (2015).  A comparison of non-integrating reprogramming methods.  Nature Biotechnology.  33(1).
  • Timp W, Bravo HC, McDonald OG, Goggins M, Umbricht C, Zeiger M, Feinberg AP, Irizarry RA (2014).  Large hypomethylated blocks as a universal defining epigenetic alteration in human solid tumors.  Genome Medicine.  6(8).
  • Feinberg AP (2014).  Epigenetic stochasticity, nuclear structure and cancer: The implications for medicine.  Journal of Internal Medicine.  276(1).
  • Prusevich P, Kalin JH, Ming SA, Basso M, Givens J, Li X, Hu J, Taylor MS, Cieniewicz AM, Hsiao PY, Huang R, Roberson H, Adejola N, Avery LB, Casero RA, Taverna SD, Qian J, Tackett AJ, Ratan RR, McDonald OG, Feinberg AP, Cole PA (2014).  A selective phenelzine analogue inhibitor of histone demethylase LSD1.  ACS Chemical Biology.  9(6).
  • Feinberg A (2014).  DNA methylation in cancer: Three decades of discovery.  Genome Medicine.  6(5).
  • Aryee MJ, Jaffe AE, Corrada-Bravo H, Ladd-Acosta C, Feinberg AP, Hansen KD, Irizarry RA (2014).  Minfi: A flexible and comprehensive Bioconductor package for the analysis of Infinium DNA methylation microarrays.  Bioinformatics.  30(10).
  • Liu Y, Li X, Aryee MJ, Ekström TJ, Padyukov L, Klareskog L, Vandiver A, Moore AZ, Tanaka T, Ferrucci L, Fallin MD, Feinberg AP (2014).  GeMes, clusters of DNA methylation under genetic control, can inform genetic and epigenetic analysis of disease.  American Journal of Human Genetics.  94(4).
  • Hansen KD, Sabunciyan S, Langmead B, Nagy N, Curley R, Klein G, Klein E, Salamon D, Feinberg AP (2014).  Large-scale hypomethylated blocks associated with Epstein-Barr virus-induced B-cell immortalization.  Genome Research.  24(2).
  • Feinberg AP (2014).  The nucleolus gets the silent treatment.  Cell Stem Cell.  15(6).
  • Ladd-Acosta C, Hansen KD, Briem E, Fallin MD, Kaufmann WE, Feinberg AP (2014).  Common DNA methylation alterations in multiple brain regions in autism.  Molecular Psychiatry.  19(8).
  • Feinberg AP (2013).  The epigenetic basis of common human disease..  Transactions of the American Clinical and Climatological Association.  124.
  • Montaño CM, Irizarry RA, Kaufmann WE, Talbot K, Gur RE, Feinberg AP, Taub MA (2013).  Measuring cell-type specific differential methylation in human brain tissue.  Genome Biology.  14(8).
  • Timp W, Feinberg AP (2013).  Cancer as a dysregulated epigenome allowing cellular growth advantage at the expense of the host.  Nature Reviews Cancer.  13(7).
  • Reddy KL, Feinberg AP (2013).  Higher order chromatin organization in cancer.  Seminars in Cancer Biology.  23(2).
  • Liu Y, Aryee MJ, Padyukov L, Fallin MD, Hesselberg E, Runarsson A, Reinius L, Acevedo N, Taub M, Ronninger M, Shchetynsky K, Scheynius A, Kere J, Alfredsson L, Klareskog L, Ekström TJ, Feinberg AP (2013).  Epigenome-wide association data implicate DNA methylation as an intermediary of genetic risk in rheumatoid arthritis.  Nature Biotechnology.  31(2).
  • Feinberg AP (2013).  A third-generation method reveals cell lineage ancestry.  Nature Methods.  10(2).
  • Fraleigh-Lohrfink KJ, Schneider MV, Whittington D, Feinberg AP (2013).  Increase in Science Research Commitment in a Didactic and Laboratory-Based Program Targeted to Gifted Minority High-School Students.  Roeper Review.  35(1).
  • Wen B, Wu H, Loh YH, Briem E, Daley GQ, Feinberg AP (2012).  Euchromatin islands in large heterochromatin domains are enriched for CTCF binding and differentially DNA-methylated regions.  BMC Genomics.  13(1).
  • Herb BR, Wolschin F, Hansen KD, Aryee MJ, Langmead B, Irizarry R, Amdam GV, Feinberg AP (2012).  Reversible switching between epigenetic states in honeybee behavioral subcastes.  Nature Neuroscience.  15(10).
  • Pujadas E, Feinberg AP (2012).  Regulated noise in the epigenetic landscape of development and disease.  Cell.  148(6).
  • Jaffe AE, Murakami P, Lee H, Leek JT, Fallin MD, Feinberg AP, Irizarry RA (2012).  Bump hunting to identify differentially methylated regions in epigenetic epidemiology studies.  International Journal of Epidemiology.  41(1).
  • Lee H, Jaffe AE, Feinberg JI, Tryggvadottir R, Brown S, Montano C, Aryee MJ, Irizarry RA, Herbstman J, Witter FR, Goldman LR, Feinberg AP, Fallin MD (2012).  DNA methylation shows genome-wide association of NFIX, RAPGEF2 and MSRB3 with gestational age at birth.  International Journal of Epidemiology.  41(1).
  • Vanaja KG, Feinberg AP, Levchenko A (2012).  Stem cell differentiation as a renewal-reward process: Predictions and validation in the colonic crypt.  Advances in Experimental Medicine and Biology.  736.
  • Sabunciyan S, Aryee MJ, Irizarry RA, Rongione M, Webster MJ, Kaufman WE, Murakami P, Lessard A, Yolken RH, Feinberg AP, Potash JB, GenRED Consortium (2012).  Genome-wide DNA methylation scan in major depressive disorder..  PloS one.  7(4).
  • Jaffe AE, Feinberg AP, Irizarry RA, Leek JT (2012).  Significance analysis and statistical dissection of variably methylated regions.  Biostatistics.  13(1).
  • Kim K, Zhao R, Doi A, Ng K, Unternaehrer J, Cahan P, Hongguang H, Loh YH, Aryee MJ, Lensch MW, Li H, Collins JJ, Feinberg AP, Daley GQ (2011).  Donor cell type can influence the epigenome and differentiation potential of human induced pluripotent stem cells.  Nature Biotechnology.  29(12).
  • Onyango P, Feinberg AP (2011).  A nucleolar protein, H19 opposite tumor suppressor (HOTS), is a tumor growth inhibitor encoded by a human imprinted H19 antisense transcript.  Proceedings of the National Academy of Sciences of the United States of America.  108(40).
  • Hansen KD, Timp W, Bravo HC, Sabunciyan S, Langmead B, McDonald OG, Wen B, Wu H, Liu Y, Diep D, Briem E, Zhang K, Irizarry RA, Feinberg AP (2011).  Increased methylation variation in epigenetic domains across cancer types.  Nature Genetics.  43(8).
  • McDonald OG, Wu H, Timp W, Doi A, Feinberg AP (2011).  Genome-scale epigenetic reprogramming during epithelial-to-mesenchymal transition.  Nature Structural and Molecular Biology.  18(8).
  • Aryee MJ, Wu Z, Ladd-Acosta C, Herb B, Feinberg AP, Yegnasubramanian S, Irizarry RA (2011).  Accurate genome-scale percentage DNA methylation estimates from microarray data.  Biostatistics.  12(2).
  • Lee RS, Tamashiro KLK, Aryee MJ, Murakami P, Seifuddin F, Herb B, Huo Y, Rongione M, Feinberg AP, Moran TH, Potash JB (2011).  Adaptation of the CHARM DNA methylation platform for the rat genome reveals novel brain region-specific differences.  Epigenetics.  6(11).
  • Fradin D, Cheslack-Postava K, Ladd-Acosta C, Newschaffer C, Chakravarti A, Arking DE, Feinberg A, Fallin MD (2010).  Parent-of-origin effects in autism identified through genome-wide linkage analysis of 16,000 SNPs.  PLoS ONE.  5(9).
  • Feinberg AP, Irizarry RA, Fradin D, Aryee MJ, Murakami P, Aspelund T, Eiriksdottir G, Harris TB, Launer L, Gudnason V, Fallin MD (2010).  Personalized epigenomic signatures that are stable over time and covary with body mass index.  Science Translational Medicine.  2(49).
  • Wu H, Caffo B, Jaffee HA, Irizarry RA, Feinberg AP (2010).  Redefining CpG islands using hidden Markov models.  Biostatistics.  11(3).
  • Ladd-Acosta C, J. Aryee M, Ordway JM, Feinberg AP (2010).  Comprehensive high-throughput arrays for relative methylation (CHARM).  Current Protocols in Human Genetics.  (SUPPL. 65).
  • Feinberg AP, Irizarry RA (2010).  Stochastic epigenetic variation as a driving force of development, evolutionary adaptation, and disease.  Proceedings of the National Academy of Sciences of the United States of America.  107(SUPPL. 1).
  • Kim K, Doi A, Wen B, Ng K, Zhao R, Cahan P, Kim J, Aryee MJ, Ji H, Ehrlich LIR, Yabuuchi A, Takeuchi A, Cunniff KC, Hongguang H, McKinney-Freeman S, Naveiras O, Yoon TJ, Irizarry RA, Jung N, Seita J, Hanna J, Murakami P, Jaenisch R, Weissleder R, Orkin SH, Weissman IL, Feinberg AP, Daley GQ (2010).  Epigenetic memory in induced pluripotent stem cells.  Nature.  467(7313).
  • Feinberg AP (2010).  Genome-scale approaches to the epigenetics of common human disease.  Virchows Archiv.  456(1).
  • Lennerz JK, Timmerman RJ, Grange DK, DeBaun MR, Feinberg AP, Zehnbauer BA (2010).  Addition of H19 'loss of methylation testing' for Beckwith-Wiedemann syndrome (BWS) increases the diagnostic yield.  Journal of Molecular Diagnostics.  12(5).
  • Ji H, Ehrlich LIR, Seita J, Murakami P, Doi A, Lindau P, Lee H, Aryee MJ, Irizarry RA, Kim K, Rossi DJ, Inlay MA, Serwold T, Karsunky H, Ho L, Daley GQ, Weissman IL, Feinberg AP (2010).  Comprehensive methylome map of lineage commitment from haematopoietic progenitors.  Nature.  467(7313).
  • Doi A, Park IH, Wen B, Murakami P, Aryee MJ, Irizarry R, Herb B, Ladd-Acosta C, Rho J, Loewer S, Miller J, Schlaeger T, Daley GQ, Feinberg AP (2009).  Differential methylation of tissue-and cancer-specific CpG island shores distinguishes human induced pluripotent stem cells, embryonic stem cells and fibroblasts.  Nature Genetics.  41(12).
  • Irizarry RA, Wu H, Feinberg AP (2009).  A species-generalized probabilistic model-based definition of CpG islands.  Mammalian Genome.  20(9-10).
  • Mirsaidov U, Timp W, Zou X, Dimitrov V, Schulten K, Feinberg AP, Timp G (2009).  Nanoelectromechanics of methylated DNA in a synthetic nanopore.  Biophysical Journal.  96(4).
  • Cruz-Correa M, Zhao R, Oviedo M, Bernabe RD, Lacourt M, Cardona A, Lopez-Enriquez R, Wexner S, Cuffari C, Hylind L, Platz E, Cui H, Feinberg AP, Giardiello FM (2009).  Temporal stability and age-related prevalence of loss of imprinting of the insulin-like growth factor-2 gene.  Epigenetics.  4(2).
  • Timp W, Levchenko A, Feinberg AP (2009).  A new link between epigenetic progenitor lesions in cancer and the dynamics of signal transduction.  Cell Cycle.  8(3).
  • Wen B, Wu H, Shinkai Y, Irizarry RA, Feinberg AP (2009).  Large histone H3 lysine 9 dimethylated chromatin blocks distinguish differentiated from embryonic stem cells.  Nature Genetics.  41(2).
  • Irizarry RA, Ladd-Acosta C, Wen B, Wu Z, Montano C, Onyango P, Cui H, Gabo K, Rongione M, Webster M, Ji H, Potash JB, Sabunciyan S, Feinberg AP (2009).  The human colon cancer methylome shows similar hypo- and hypermethylation at conserved tissue-specific CpG island shores.  Nature Genetics.  41(2).
  • Wen B, Wu H, Bjornsson H, Green RD, Irizarry R, Feinberg AP (2008).  Overlapping euchromatin/heterochromatin-associated marks are enriched in imprinted gene regions and predict allele-specific modification.  Genome Research.  18(11).
  • Nguyen P, Bar-Sela G, Sun L, Bisht KS, Cui H, Kohn E, Feinberg AP, Gius D (2008).  BAT3 and SET1A form a complex with CTCFL/BORIS to modulate H3K4 histone dimethylation and gene expression.  Molecular and Cellular Biology.  28(21).
  • Jones PA, Archer TK, Baylin SB, Beck S, Berger S, Bernstein BE, Carpten JD, Clark SJ, Costello JF, Doerge RW, Esteller M, Feinberg AP, Gingeras TR, Greally JM, Henikoff S, Herman JG, Jackson-Grusby L, Jenuwein T, Jirtle RL, Kim YJ, Laird PW, Lim B, Martienssen R, Polyak K, Stunnenberg H, Tlsty TD, Tycko B, Ushijima T, Zhu J, Pirrotta V, Allis CD, Elgin SC, Rine J, Wu C (2008).  Moving AHEAD with an international human epigenome project.  Nature.  454(7205).
  • Nguyen P, Cui H, Bisht KS, Sun L, Patel K, Lee RS, Kugoh H, Oshimura M, Feinberg AP, Gius D (2008).  CTCFL/BORIS is a methylation-independent DNA-binding protein that preferentially binds to the paternal H19 differentially methylated region.  Cancer Research.  68(14).
  • Bjornsson HT, Sigurdsson MI, Fallin MD, Irizarry RA, Aspelund T, Cui H, Yu W, Rongione MA, Ekström TJ, Harris TB, Launer LJ, Eiriksdottir G, Leppert MF, Sapienza C, Gudnason V, Feinberg AP (2008).  Intra-individual change over time in DNA methylation with familial clustering.  JAMA - Journal of the American Medical Association.  299(24).
  • Irizarry RA, Ladd-Acosta C, Carvalho B, Wu H, Brandenburg SA, Jeddeloh JA, Wen B, Feinberg AP (2008).  Comprehensive high-throughput arrays for relative methylation (CHARM).  Genome Research.  18(5).
  • Bjornsson HT, Albert TJ, Ladd-Acosta CM, Green RD, Rongione MA, Middle CM, Irizarry RA, Broman KW, Feinberg AP (2008).  SNP-specific array-based allele-specific expression analysis.  Genome Research.  18(5).
  • Sun L, Huang L, Nguyen P, Bisht KS, Bar-Sela G, Ho AS, Bradbury CM, Yu W, Cui H, Lee S, Trepel JB, Feinberg AP, Gius D (2008).  DNA methyltransferase 1 and 3B activate BAG-1 expression via recruitment of CTCFL/BORIS and modulation of promoter histone methylation.  Cancer Research.  68(8).
  • Feinberg AP (2008).  Epigenetics at the epicenter of modern medicine.  JAMA - Journal of the American Medical Association.  299(11).
  • Potash JB, Buervenich S, Cox NJ, Zandi PP, Akula N, Steele J, Rathe JA, Avramopoulos D, Detera-Wadleigh SD, Gershon ES, DePaulo JR, Feinberg AP, McMahon FJ (2008).  Gene-Bbsed SNP mapping of a psychotic bipolar affective disorder linkage region on 22q12.3: Association with HMG2L1 and TOM1.  American Journal of Medical Genetics, Part B: Neuropsychiatric Genetics.  147(1).
  • Yu W, Gius D, Onyango P, Muldoon-Jacobs K, Karp J, Feinberg AP, Cui H (2008).  Epigenetic silencing of tumour suppressor gene p15 by its antisense RNA.  Nature.  451(7175).
  • Kaneda A, Wang CJ, Cheong R, Timp W, Onyango P, Wen B, Iacobuzio-Donahue CA, Ohlsson R, Andraos R, Pearson MA, Sharov AA, Longo DL, Ko MSH, Levchenko A, Feinberg AP (2007).  Enhanced sensitivity to IGF-II signaling links loss of imprinting of IGF2 to increased cell proliferation and tumor risk.  Proceedings of the National Academy of Sciences of the United States of America.  104(52).
  • Bjornsson HT, Brown LJ, Fallin MD, Rongione MA, Bibikova M, Wickham E, Fan JB, Feinberg AP (2007).  Epigenetic specificity of loss of imprinting of the IGF2 gene in wilms tumors.  Journal of the National Cancer Institute.  99(16).
  • Postovit LM, Costa FF, Bischof JM, Seftor EA, Wen B, Seftor REB, Feinberg AP, Soares MB, Hendrix MJC (2007).  The commonality of plasticity underlying multipotent tumor cells and embryonic stem cells.  Journal of Cellular Biochemistry.  101(4).
  • Feinberg AP (2007).  Phenotypic plasticity and the epigenetics of human disease.  Nature.  447(7143).
  • Gosden RG, Feinberg AP (2007).  Genetics and epigenetics - Nature's pen-and-pencil set.  New England Journal of Medicine.  356(7).
  • Rivera MN, Woo JK, Wells J, Driscoll DR, Brannigan BW, Han M, Kim JC, Feinberg AP, Gerald WL, Vargas SO, Chin L, Iafrate AJ, Bell DW, Haber DA (2007).  An X chromosome gene, WTX, is commonly inactivated in wilms tumor.  Science.  315(5812).
  • Reinhold WC, Reimers MA, Maunakea AK, Kim S, Lababidi S, Scherf U, Shankavaram UT, Ziegler MS, Stewart C, Kouros-Mehr H, Cui H, Dolginow D, Scudiero DA, Pommier YG, Munroe DJ, Feinberg AP, Weinstein JN (2007).  Detailed DNA methylation profiles of the E-cadherin promoter in the NCI-60 cancer cells.  Molecular Cancer Therapeutics.  6(2).
  • Ladd-Acosta C, Pevsner J, Sabunciyan S, Yolken RH, Webster MJ, Dinkins T, Callinan PA, Fan JB, Potash JB, Feinberg AP (2007).  DNA methylation signatures within the human brain.  American Journal of Human Genetics.  81(6).
  • Feinberg AP (2007).  An epigenetic approach to cancer etiology.  Cancer Journal.  13(1).
  • Callinan PA, Feinberg AP (2006).  The emerging science of epigenomics..  Human molecular genetics.  15 Spec No 1.
  • Feinberg AP, Ohlsson R, Henikoff S (2006).  The epigenetic progenitor origin of human cancer.  Nature Reviews Genetics.  7(1).
  • Kaneda A, Feinberg AP (2005).  Loss of imprinting of IGF2: A common epigenetic modifier of intestinal tumor risk.  Cancer Research.  65(24).
  • Feinberg AP (2005).  A genetic approach to cancer epigenetics.  Cold Spring Harbor Symposia on Quantitative Biology.  70.
  • Wangler MF, An P, Feinberg AP, Province M, DeBaun MR (2005).  Inheritance pattern of Beckwith-Wiedemann syndrome is heterogeneous in 291 families with an affected proband.  American Journal of Medical Genetics.  137 A(1).
  • Mummert SK, Lobanenkov VA, Feinberg AP (2005).  Association of chromosome arm 16q loss with loss of imprinting of insulin-like growth factor-II in wilms tumor.  Genes Chromosomes and Cancer.  43(2).
  • Wangler MF, Chang AS, Moley KH, Feinberg AP, DeBaun MR (2005).  Factors associated with preterm delivery in mothers of children with Beckwith-Wiedemann syndrome: A case cohort study from the BWS registry.  American Journal of Medical Genetics.  134 A(2).
  • Sakatani T, Kaneda A, Iacobuzio-Donahue CA, Carter MG, De Boom Witzel S, Okano H, Ko MSH, Ohlsson R, Longo DL, Feinberg AP (2005).  Loss of imprinting of Igf2 alters intestinal maturation and tumorigenesis in mice.  Science.  307(5717).
  • Chang AS, Moley KH, Wangler M, Feinberg AP, DeBaun MR (2005).  Association between Beckwith-Wiedemann syndrome and assisted reproductive technology: A case series of 19 patients.  Fertility and Sterility.  83(2).
  • Niemitz EL, Feinberg AP, Brandenburg SA, Grundy PE, DeBaun MR (2005).  Children with idiopathic hemihypertrophy and Beckwith-Wiedemann syndrome have different constitutional epigenotypes associated with Wilms tumor.  American Journal of Human Genetics.  77(5).
  • Feinberg AP (2004).  The epigenetics of cancer etiology.  Seminars in Cancer Biology.  14(6).
  • Bjornsson HT, Cui H, Gius D, Fallin MD, Feinberg AP (2004).  The new field of epigenomics: Implications for cancer and other common disease research.  Cold Spring Harbor Symposia on Quantitative Biology.  69.
  • Gius D, Cui H, Bradbury CM, Cook J, Smart DDK, Zhao S, Young L, Brandenburg SA, Hu Y, Bisht KS, Ho AS, Mattson D, Sun L, Munson PJ, Chuang EY, Mitchell JB, Feinberg AP (2004).  Distinct effects on gene expression of chemical and genetic manipulation of the cancer epigenome revealed by a multimodality approach.  Cancer Cell.  6(4).
  • Yu W, Ginjala V, Pant V, Chernukhin I, Whitehead J, Docquier F, Farrar D, Tavoosidana G, Mukhopadhyay R, Kanduri C, Oshimura M, Feinberg AP, Lobanenkov V, Klenova E, Ohlsson R (2004).  Poly(ADP-ribosyl)ation regulates CTCF-dependent chromatin insulation.  Nature Genetics.  36(10).
  • Bjornsson HT, Daniele Fallin M, Feinberg AP (2004).  An integrated epigenetic and genetic approach to common human disease.  Trends in Genetics.  20(8).
  • Cruz-Correa M, Cui H, Giardiello FM, Powe NR, Hylind L, Robinson A, Hutcheon DF, Kafonek DR, Brandenburg S, Wu Y, He X, Feinberg AP (2004).  Loss of Imprinting of Insulin Growth Factor II Gene: A Potential Heritable Biomarker for Colon Neoplasia Predisposition.  Gastroenterology.  126(4).
  • Niemitz EL, DeBaun MR, Fallon J, Murakami K, Kugoh H, Oshimura M, Feinberg AP (2004).  Microdeletion of LIT1 in familial Beckwith-Wiedemann syndrome.  American Journal of Human Genetics.  75(5).
  • Feinberg AP, Tycko B (2004).  The history of cancer epigenetics.  Nature Reviews Cancer.  4(2).
  • Niemitz EL, Feinberg AP (2004).  Epigenetics and Assisted Reproductive Technology: A Call for Investigation.  American Journal of Human Genetics.  74(4).
  • Feinberg AP, Williams BRG (2003).  Wilms' tumor as a model for cancer biology..  Methods in molecular biology (Clifton, N.J.).  222.
  • Cui H, Cruz-Correa M, Giardiello FM, Hutcheon DF, Kafonek DR, Brandenburg S, Wu Y, He X, Powe NR, Feinberg AP (2003).  Loss of IGF2 imprinting: A potential marker of colorectal cancer risk.  Science.  299(5613).
  • Jouvenot Y, Ginjala V, Zhang L, Liu PQ, Oshimura M, Feinberg AP, Wolffe AP, Ohlsson R, Gregory PD (2003).  Targeted regulation of imprinted genes by synthetic zinc-finger transcription factors.  Gene Therapy.  10(6).
  • DeBaun MR, Niemitz EL, Feinberg AP (2003).  Association of in vitro fertilization with Beckwith-Wiedemann syndrome and epigenetic alterations of LIT1 and H19.  American Journal of Human Genetics.  72(1).
  • Kraggerud SM, Lee MP, Skotheim RI, Stenwig AE, Fosså SD, Feinberg AP, Lothe RA (2003).  Lack of parental origin specificity of altered alleles at 11p15 in testicular germ cell tumors.  Cancer Genetics and Cytogenetics.  147(1).
  • Ohlsson R, Kanduri C, Whitehead J, Pfeifer S, Lobanenkov V, Feinberg AP (2003).  Epigenetic variability and the evolution of human cancer.  Advances in Cancer Research.  88.
  • Cui H, Onyango P, Brandenburg S, Wu Y, Hsieh CL, Feinberg AP (2002).  Loss of imprinting in colorectal cancer linked to hypomethylation of H19 and IGF2.  Cancer Research.  62(22).
  • Onyango P, Celic I, McCaffery JM, Boeke JD, Feinberg AP (2002).  SIRT3, a human SIR2 homologue, is an NAD-dependent deacetylase localized to mitochondria.  Proceedings of the National Academy of Sciences of the United States of America.  99(21).
  • Onyango P, Jiang S, Uejima H, Shamblott MJ, Gearhart JD, Cui H, Feinberg AP (2002).  Monoallelic expression and methylation of imprinted genes in human and mouse embryonic germ cell lineages.  Proceedings of the National Academy of Sciences of the United States of America.  99(16).
  • Loukinov DI, Pugacheva E, Vatolin S, Pack SD, Moon H, Chernukhin I, Mannan P, Larsson E, Kanduri C, Vostrov AA, Cui H, Niemitz EL, Rasko JEJ, Docquier FM, Kistler M, Breen JJ, Zhuang Z, Quitschke WW, Renkawitz R, Klenova EM, Feinberg AP, Ohlsson R, Morse HC, Lobanenkov VV (2002).  BORIS, a novel male germ-line-specific protein associated with epigenetic reprogramming events, shares the same 11-zinc-finger domain with CTCF, the insulator protein involved in reading imprinting marks in the soma.  Proceedings of the National Academy of Sciences of the United States of America.  99(10).
  • Strichman-Almashanu LZ, Lee RS, Onyango PO, Perlman E, Flam F, Frieman MB, Feinberg AP (2002).  A genome-wide screen for normally methylated human CpG islands that can identify novel imprinted genes.  Genome Research.  12(4).
  • Rhee I, Bachman KE, Park BH, Jair KW, Yen RWC, Schuebel KE, Cui H, Feinberg AP, Lengauer C, Kinzler KW, Baylin SB, Vogelstein B (2002).  DNMT1 and DNMT3b cooperate to silence genes in human cancer cells.  Nature.  416(6880).
  • Feinberg AP, Cui H, Ohlsson R (2002).  DNA methylation and genomic imprinting: Insights from cancer into epigenetic mechanisms.  Seminars in Cancer Biology.  12(5).
  • DeBaun MR, Niemitz EL, McNeil DE, Brandenburg SA, Lee MP, Feinberg AP (2002).  Epigenetic alterations of H19 and LIT1 distinguish patients with Beckwith-Wiedemann syndrome with cancer and birth defects.  American Journal of Human Genetics.  70(3).
  • Filippova GN, Ulmer JE, Moore JM, Ward MD, Hu YJ, Neiman PE, Collins SJ, Qi CF, Loukinov DI, Pugacheva EM, Morse HC, Lobanenkov VV, Klenova EM, Grundy PE, Feinberg AP, Cleton-Jansen AM, Moerland EW, Cornelisse CJ, Suzuki H, Komiya A, Lindblom A, Dorion-Bonnet F (2002).  Tumor-associated zinc finger mutations in the CTCF transcription factor selectively alter its DNA-binding specificity.  Cancer Research.  62(1).
  • Ravenel JD, Broman KW, Perlman EJ, Niemitz EL, Jayawardena TM, Bell DW, Haber DA, Uejima H, Feinberg AP (2001).  Loss of imprinting of insulin-like growth factor-II (IGF2) gene in distinguishing specific biologic subtypes of Wilms tumor.  Journal of the National Cancer Institute.  93(22).
  • Cui H, Niemitz EL, Ravenel JD, Onyango P, Brandenburg SA, Feinberg AP, Cui H, Feinberg AP, Feinberg AP, Feinberg AP, Niemitz EL, Ravenel JD, Lobanenkov VV (2001).  Loss of imprinting of insulin-like growth factor-II in Wilms' tumor commonly involves altered methylation but not mutations of CTCF or its binding site.  Cancer Research.  61(13).
  • Onyango P, Miller W, Lehoczky J, Leung CT, Birren B, Wheelan S, Dewar K, Feinberg AP (2000).  Sequence and comparative analysis of the mouse 1-megabase region orthologous to the human 11p15 imprinted domain.  Genome Research.  10(11).
  • Uejima H, Lee MP, Cui H, Feinberg AP (2000).  Hot-stop PCR: A simple and general assay for linear quantitation of allele ratios.  Nature Genetics.  25(4).
  • Krasner A, Wallace L, Thiagalingam A, Jones C, Lengauer C, Minahan L, Ma Y, Kalikin L, Feinberg AP, Jabs EW, Tunnacliffe A, Baylin SB, Ball DW, Nelkin BD (2000).  Cloning and chromosomal localization of the human BARX2 homeobox protein gene.  Gene.  250(1-2).
  • Feinberg AP (2000).  DNA methylation, genomic imprinting and cancer.  Current Topics in Microbiology and Immunology.  249.
  • Alders M, Ryan A, Hodges M, Bliek J, Feinberg AP, Privitera O, Westerveld A, Little PFR, Mannens MMAM (2000).  Disrtruption of a novel imprinted zinc-finger gene, ZNF215, in Beckwith- Wiedemann syndrome.  American Journal of Human Genetics.  66(5).
  • Lee MP, Ravenel JD, Hu RJ, Lustig LR, Tomaselli G, Berger RD, Brandenburg SA, Litzi TJ, Bunton TE, Limb C, Francis H, Gorelikow M, Gu H, Washington K, Argani P, Goldenring JR, Coffey RJ, Feinberg AP (2000).  Targeted disruption of the Kvlqt1 gene causes deafness and gastric hyperplasia in mice.  Journal of Clinical Investigation.  106(12).
  • Ohlsson R, Cui H, He L, Pfeifer S, Malmikumpu H, Jiang S, Feinberg AP, Hedborg F (1999).  Mosaic allelic insulin-like growth factor 2 expression patterns reveal a link between Wilms' tumorigenesis and epigenetic heterogeneity.  Cancer Research.  59(16).
  • Mitsuya K, Meguro M, Lee MP, Katoh M, Schulz TC, Kugoh H, Yoshida MA, Niikawa N, Feinberg AP, Oshimura M (1999).  LIT1, an imprinted antisense RNA in the human KvLQT1 locus identified by screening for differentially expressed transcripts using monochromosomal hybrids.  Human Molecular Genetics.  8(7).
  • Lee MP, DeBaun MR, Mitsuya K, Galonek HL, Brandenburg S, Oshimura M, Feinberg AP (1999).  Loss of imprinting of a paternally expressed transcript, with antisense orientation to KVLQT1, occurs frequently in Beckwith-Wiedemann syndrome and is independent of insulin-like growth factor II imprinting.  Proceedings of the National Academy of Sciences of the United States of America.  96(9).
  • Feinberg AP (1999).  Imprinting of a genomic domain of 11p15 and loss of imprinting in cancer: An introduction.  Cancer Research.  59(7 SUPPL.).
  • Feinberg AP (1999).  Mendel stayed home.  Trends in Genetics.  15(2).
  • Lee MP, Brandenburg S, Landes GM, Adams M, Miller G, Feinberg AP (1999).  Two novel genes in the center of the 11p15 imprinted domain escape genomic imprinting.  Human Molecular Genetics.  8(4).
  • Cui H, Horon IL, Ohlsson R, Hamilton SR, Feinberg AP (1998).  Loss of imprinting in normal tissue of colorectal cancer patients with microsatellite instability.  Nature Medicine.  4(11).
  • Jiang S, Hemann MA, Lee MP, Feinberg AP (1998).  Strain-dependent developmental relaxation of imprinting of an endogenous mouse gene, K(v)lqt1.  Genomics.  53(3).
  • Lee MP, Reeves C, Schmitt A, Su K, Connors TD, Hu RJ, Brandenburg S, Lee MJ, Miller G, Feinberg AP (1998).  Somatic mutation of TSSC5, a novel imprinted gene from human chromosome 11p15.5.  Cancer Research.  58(18).
  • Randhawa GS, Bell DW, Testa JR, Feinberg AP (1998).  Identification and mapping of human histone acetylation modifier gene homologues.  Genomics.  51(2).
  • Paulsen M, Davies KR, Bowden LM, Villar AJ, Franck O, Fuermann M, Dean WL, Moore TF, Rodrigues N, Davies KE, Hu RJ, Feinberg AP, Maher ER, Reik W, Walter J (1998).  Syntenic organization of the mouse distal chromosome 7 imprinting cluster and the Beckwith-Wiedemann syndrome region in chromosome 11p15.5.  Human Molecular Genetics.  7(7).
  • Randhawa GS, Cui H, Barletta JA, Strichman-Almashanu LZ, Talpaz M, Kantarjian H, Deisseroth AB, Champlin RC, Feinberg AP (1998).  Loss of imprinting in disease progression in chronic myelogenous leukemia.  Blood.  91(9).
  • Lee MP, Feinberg AP (1998).  Genomic imprinting of a human apoptosis gene homologue, TSSC3.  Cancer Research.  58(5).
  • Hu RJ, Lee MP, Connors TD, Johnson LA, Burn TC, Su K, Landes GM, Feinberg AP (1997).  A 2.5-Mb transcript map of a tumor-suppressing subchromosomal transferable fragment from 11p15.5, isolation and sequence analysis of three novel genes.  Genomics.  46(1).
  • Lee MP, Feinberg AP (1997).  Aberrant splicing but not mutations of TSG101 in human breast cancer.  Cancer Research.  57(15).
  • Cost GJ, Thompson JS, Reichard BA, Lee JY, Feinberg AP (1997).  Lack of imprinting of three human cyclin-dependent kinase inhibitor genes.  Cancer Research.  57(5).
  • Lee MP, Hu RJ, Johnson LA, Feinberg AP (1997).  Human KVLQT1 gene shows tissue-specific imprinting and encompasses Beckwith-Wiedemann syndrome chromosomal rearrangements.  Nature Genetics.  15(2).
  • Barletta JM, Rainier S, Feinberg AP (1997).  Reversal of loss of imprinting in tumor cells by 5-aza-2'-deoxycytidine.  Cancer Research.  57(1).
  • Koi M, Lamb PW, Filatov L, Feinberg AP, Barrett JC (1997).  Construction of chicken × human microcell hybrids for human gene targeting.  Cytogenetic and Genome Research.  76(1-2).
  • Lee MP, DeBaun M, Randhawa G, Reichard BA, Elledge SJ, Feinberg AP (1997).  Low frequency of p57(KIP2) mutation in Beckwith-Wiedemann syndrome.  American Journal of Human Genetics.  61(2).
  • Thompson JS, Reese KJ, DeBaun MR, Perlman EJ, Feinberg AP (1996).  Reduced expression of the cyclin-dependent kinase inhibitor gene p57(KIP2) in Wilms' tumor.  Cancer Research.  56(24).
  • Alders M, Bliek J, Redeker B, Ryan A, Feinberg A, Westerveld A, Little P, Mannens M (1996).  Cloning of candidate genes involved in the Beckwith-Wiedemann syndrome and childhood tumors.  Medical and Pediatric Oncology.  27(5).
  • Mannens M, Alders M, Redeker B, Bliek J, Steenman M, Wiesmeyer C, De Meulemeester M, Ryan A, Kalikin L, Voûte T, De Kraker J, Hoovers J, Slater R, Feinberg A, Little P, Westerveld A (1996).  Positional cloning of genes involved in the Beckwith-Wiedemann syndrome, hemihypertrophy, and associated childhood tumors.  Medical and Pediatric Oncology.  27(5).
  • Feinberg AP (1996).  Multiple genetic abnormalities of 11p15 in Wilms' tumor.  Medical and Pediatric Oncology.  27(5).
  • Hu RJ, Lee MP, Johnson LA, Feinberg AP (1996).  A novel human homologue of yeast nucleosome assembly protein, 65 kb centromeric to the p57(KIP2) gene, is biallelically expressed in fetal and adult tissues.  Human Molecular Genetics.  5(11).
  • Lee PJ, Washer LL, Law DJ, Boland CR, Horon IL, Feinberg AP (1996).  Limited up-regulation of DNA methyltransferase in human colon cancer reflecting increased cell proliferation.  Proceedings of the National Academy of Sciences of the United States of America.  93(19).
  • Matsuoka S, Thompson JS, Edwards MC, Barletta JM, Grundy P, Kalikin LM, Harper JW, Elledge SJ, Feinberg AP (1996).  Imprinting of the gene encoding a human cyclin-dependent kinase inhibitor, p57KIP2, on chromosome 11p15.  Proceedings of the National Academy of Sciences of the United States of America.  93(7).
  • Nakamura T, Largaespada DA, Lee MP, Johnson LA, Ohyashiki K, Toyama K, Chen SJ, Willman CL, Chen IM, Feinberg AP, Jenkins NA, Copeland NG, Shaughnessy JD (1996).  Fusion of the nucleoporin gene NUP98 to HOXA9 by the chromosome translocation t(7;11)(p15;p15) in human myeloid leukaemia.  Nature Genetics.  12(2).
  • Hoovers JMN, Kalikin LM, Johnson LA, Alders M, Redeker B, Law DJ, Bliek J, Steenman M, Benedict M, Wiegant J, Lengauer C, Taillon-Miller P, Schlessinger D, Edwards MC, Elledge SJ, Ivens A, Westerveld A, Little P, Mannens M, Feinberg AP (1995).  Multiple genetic loci within 11p15 defined by Beckwith-Wiedemann syndrome rearrangement breakpoints and subchromosomal transferable fragments.  Proceedings of the National Academy of Sciences of the United States of America.  92(26).
  • Feinberg AP, Rainier S, DeBaun MR (1995).  Genomic imprinting, DNA methylation, and cancer..  Journal of the National Cancer Institute. Monographs.  (17).
  • Rainier S, Dobry CJ, Feinberg AP (1995).  Loss of Imprinting in Hepatoblastoma.  Cancer Research.  55(9).
  • Boland CR, Sato J, Appelman HD, Bresalier RS, Feinberg AP (1995).  Microallelotyping defines the sequence and tempo of allelic losses at tumour suppressor gene loci during colorectal cancer progression.  Nature Medicine.  1(9).
  • Feinberg AP (1994).  A developmental context for multiple genetic alterations in Wilms' tumor..  Journal of cell science. Supplement.  18.
  • Rainier S, Feinberg AP (1994).  Genomic imprinting, DNA methylation, and cancer.  Journal of the National Cancer Institute.  86(10).
  • Lee JY, Koi M, Stanbridge EJ, Oshimura M, Kumamoto AT, Feinberg AP (1994).  Simple purification of human chromosomes to homogeneity using muntjac hybrid cells.  Nature Genetics.  7(1).
  • Redeker E, Hoovers JMN, Alders M, van Moorsel CJA, Ivens AC, Gregory S, Kalikin L, Bliek J, de Galan L, van den Bogaard R, Visser J, Feinberg AP, Little PFR, Westerveld A, Mannens M (1994).  An integrated physical map of 210 markers assigned to the short arm of human chromosome 11.  Genomics.  21(3).
  • Feinberg AP, Kalikin LM, Johnson LA, Thompson JS (1994).  Loss of imprinting in human cancer.  Cold Spring Harbor Symposia on Quantitative Biology.  59.
  • Mannens M, Hoovers JMN, Redeker E, Verjaal M, Feinberg AP, Little P, Boavida M, Coad N, Steenman M, Bliek J, Niikawa N, Tonoki H, Nakamura Y, de Boer EG, Slater RM, John R, Cowell JK, Junien C, Henry I (1994).  Parental imprinting of human chromosome region 11p15.3-pter involved in the Beckwith-Wiedemann syndrome and various human neoplasia.  European Journal of Human Genetics.  2(1).
  • Bestor TH, Chandler VL, Feinberg AP (1994).  Epigenetic effects in eukaryotic gene expression.  Developmental Genetics.  15(6).
  • Steenman MJC, Rainier S, Dobry CJ, Grundy P, Horon IL, Feinberg AP (1994).  Loss of imprinting of IGF2 is linked to reduced expression and abnormal methylation of H19 in Wilms' tumour.  Nature Genetics.  7(3).
  • Koi M, Johnson LA, Kalikin LM, Little PFR, Nakamura Y, Feinberg AP (1993).  Tumor cell growth arrest caused by subchromosomal transferable DNA fragments from chromosome 11.  Science.  260(5106).
  • Rainier S, Johnson LA, Dobry CJ, Ping AJ, Grundy PE, Feinberg AP (1993).  Relaxation of imprinted genes in human cancer.  Nature.  362(6422).
  • Feinberg AP (1993).  Genomic imprinting and gene activation in cancer.  Nature Genetics.  4(2).
  • Feinberg AP, Johnson LA, David J, Williams BRG, Thomas G, Boland CR (1992).  Multiple Tumor Suppressor Genes in Multistep Carcinogenesis.  Tohoku Journal of Experimental Medicine.  168(2).
  • Maw MA, Grundy PE, Millow LJ, Eccles MR, Dunn RS, Smith PJ, Feinberg AP, Law DJ, Paterson MC, Telzerow PE, Callen DF, Thompson AD, Richards RI, Reeve AE (1992).  A Third Wilms5 Tumor Locus on Chromosome 16q.  Cancer Research.  52(11).
  • Koi M, Johnson LA, Feinberg AP (1992).  A Novel General Strategy for Cloning Tumor Suppressor Genes Using Radiation-Reduced Chromosomal Superfragments.  Tohoku Journal of Experimental Medicine.  168(2).
  • Claxton D, Suh SP, Filaccio M, Ellerson D, Gaozza E, Andersson B, Brenner M, Reading C, Feinberg A, Moen R, Belmont J, Moore K, Talpaz M, Kantarjian H, Deisseroth A (1991).  Molecular analysis of retroviral transduction in chronic myelogenous leukemia.  Human Gene Therapy.  2(4).
  • Upadhyaya G, Guba SC, Sih SA, Feinberg AP, Talpaz M, Kantarjian HM, Deisseroth AB, Emerson SG (1991).  Interferon-alpha restores the deficient expression of the cytoadhesion molecule lymphocyte function antigen-3 by chronic myelogenous leukemia progenitor cells.  Journal of Clinical Investigation.  88(6).
  • Bonetta L, Kuehn SE, Huang A, Law DJ, Kalikin LM, Koi M, Reeve AE, Brownstein BH, Yeger H, Williams BRG, Feinberg AP (1990).  Wilms tumor locus on 11p13 defined by multiple CpG island-associated transcripts.  Science.  250(4983).
  • Huang A, Campbell CE, Bonetta L, McAndrews-Hill MS, Chilton-MacNeill S, Coppes MJ, Law DJ, Feinberg AP, Yeger H, Williams BRG (1990).  Tissue, developmental, and tumor-specific expression of divergent transcripts in Wilms tumor.  Science.  250(4983).
  • Delattre O, Law DJ, Remvikos Y, Sastre X, Feinberg AP, Olschwang S, Melot T, Salmon RJ, Validire P, Thomas G (1989).  MULTIPLE GENETIC ALTERATIONS IN DISTAL AND PROXIMAL COLORECTAL CANCER.  The Lancet.  334(8659).
  • Ping AJ, Reeve AE, Law EJ, Young MR, Boehnke M, Feinberg AP (1989).  Genetic linkage of Beckwith-Wiedemann syndrome to 11p15.  American Journal of Human Genetics.  44(5).
  • Reeve AE, Sih SA, Raizis AM, Feinberg AP (1989).  Loss of allelic heterozygosity at a second locus on chromosome 11 in sporadic Wilms' tumor cells.  Molecular and Cellular Biology.  9(4).
  • Rainier S, Feinberg AP (1988).  Capture and characterization of 5-aza-2'-deoxycytidine-treated C3H/10T 1/2 cells prior to transformation.  Proceedings of the National Academy of Sciences of the United States of America.  85(17).
  • Feinberg AP (1988).  Alterations in DNA methylation in colorectal polyps and cancer..  Progress in clinical and biological research.  279.
  • Law DJ, Olschwang S, Monpezat JP, Lefrançois D, Jagelman D, Petrelli NJ, Thomas G, Feinberg AP (1988).  Concerted nonsyntenic allelic loss in human colorectal carcinoma.  Science.  241(4868).
  • Feinberg AP, Gehrke CW, Kuo KC, Ehrlich M (1988).  Reduced Genomic 5-Methylcytosine Content in Human Colonic Neoplasia.  Cancer Research.  48(5).
  • Feinberg AP, Vogelstein B (1987).  Alterations in DNA methylation in human colon neoplasia.  Seminars in Surgical Oncology.  3(3).
  • Trent J, Meltzer P, Rosenblum M, Harsh G, Kinzler K, Mashal R, Feinberg A, Vogelstein B (1986).  Evidence for rearrangement, amplification, and expression of c-myc in a human glioblastoma.  Proceedings of the National Academy of Sciences of the United States of America.  83(2).
  • Fearon ER, Feinberg AP, Hamilton SH, Vogelstein B (1985).  Loss of genes on the short arm of chromosome 11 in bladder cancer.  Nature.  318(6044).
  • Feinberg AP (1985).  The molecular biology of human cancer..  Progress in clinical and biological research.  198.
  • Goelz SE, Vogelstein B, Hamilton SR, Feinberg AP (1985).  Hypomethylation of DNA from benign and malignant human colon neoplasms.  Science.  228(4696).
  • Vogelstein B, Fearon ER, Hamilton SR, Feinberg AP (1985).  Use of restriction fragment length polymorphisms to determine the clonal origin of human tumors.  Science.  227(4687).
  • Fearon ER, Vogelstein B, Feinberg AP (1984).  Somatic deletion and duplication of genes on chromosome 11 in Wilms' tumours.  Nature.  309(5964).
  • Feinberg AP, Vogelstein B (1984).  "A technique for radiolabeling DNA restriction endonuclease fragments to high specific activity". Addendum..  Analytical biochemistry.  137(1).
  • Feinberg AP, Vogelstein B (1983).  Hypomethylation distinguishes genes of some human cancers from their normal counterparts.  Nature.  301(5895).
  • Feinberg AP, Vogelstein B (1983).  A technique for radiolabeling DNA restriction endonuclease fragments to high specific activity.  Analytical Biochemistry.  132(1).
  • Feinberg AP, Vogelstein B (1983).  Hypomethylation of ras oncogenes in primary human cancers.  Biochemical and Biophysical Research Communications.  111(1).
  • Feinberg AP, Vogelstein B, Droller MJ, Baylin SB, Nelkin BD (1983).  Mutation affecting the 12th amino acid of the c-Ha-ras oncogene product occurs infrequently in human cancer.  Science.  220(4602).
  • Feinberg AP, Coffey DS (1982).  Organ site specificity for cancer in chromosomal instability disorders.  Cancer Research.  42(8).
  • Feinberg AP, Springer WR, Barondes SH (1979).  Segregation of pre-stalk and pre-spore cells of Dictyostelium discoideum: observations consistent with selective cell cohesion..  Proceedings of the National Academy of Sciences of the United States of America.  76(8).
  • Creese I, Feinberg AP, Snyder SH (1976).  Butyrophenone influences on the opiate receptor.  European Journal of Pharmacology.  36(1).
  • Feinberg AP, Creese I, Snyder SH (1976).  The opiate receptor: a model explaining structure activity relationships of opiate agonists and antagonists.  Proceedings of the National Academy of Sciences of the United States of America.  73(11).
  • Feinberg AP, Snyder SH (1975).  Phenothiazine drugs: structure activity relationships explained by a conformation that mimics dopamine.  Proceedings of the National Academy of Sciences of the United States of America.  72(5).
Book Chapters
  • Feinberg AP (2011).  The epigenesis of an epigeneticist.  Medicine Science and Dreams: The Making of Physician-Scientists.
  • Ladd-Acosta C, Feinberg AP (2009).  Cancer epigenomics.  Epigenomics.
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