Carass, Aaron

Assoc Res Scientist
Electrical And Computer Engineering

Clark Hall 201
aaron_carass@jhu.edu

Jump to:

About

Education
  • Master of Science 2002, The Johns Hopkins University
  • Master of Mathematics 2002, The Johns Hopkins University

Publications

Journal Articles
  • Carass A, Cuzzocreo JL, Han S, Hernandez-Castillo CR, Rasser PE, Ganz M, Beliveau V, Dolz J, Ben Ayed I, Desrosiers C, Thyreau B, Romero JE, Coupé P, Manjón JV, Fonov VS, Collins DL, Ying SH, Onyike CU, Crocetti D, Landman BA, Mostofsky SH, Thompson PM, Prince JL (2018).  Comparing fully automated state-of-the-art cerebellum parcellation from magnetic resonance images.  NeuroImage.  183.
  • Wongsripuemtet J, Tyan AE, Carass A, Agarwal S, Gujar SK, Pillai JJ, Sair HI (2018).  Preoperative mapping of the supplementary motor area in patients with brain tumor using resting-state fMRI with seed-based analysis.  American Journal of Neuroradiology.  39(8).
  • Zhao C, Carass A, Dewey BE, Prince JL (2018).  Self super-resolution for magnetic resonance images using deep networks.  Proceedings - International Symposium on Biomedical Imaging.  2018-April.
  • Liu Y, Carass A, Solomon SD, Saidha S, Calabresi PA, Prince JL (2018).  Multi-layer fast level set segmentation for macular OCT.  Proceedings - International Symposium on Biomedical Imaging.  2018-April.
  • Zuo L, Carass A, Han S, Prince JL (2018).  Automatic outlier detection using hidden Markov model for cerebellar lobule segmentation.  Progress in Biomedical Optics and Imaging - Proceedings of SPIE.  10578.
  • Dewey BE, Zhao C, Carass A, Oh J, Calabresi PA, van Zijl PCM, Prince JL (2018).  Deep harmonization of inconsistent mr data for consistent volume segmentation.  Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics).  11037 LNCS.
  • Zhao C, Carass A, Dewey BE, Woo J, Oh J, Calabresi PA, Reich DS, Sati P, Pham DL, Prince JL (2018).  A deep learning based anti-aliasing self super-resolution algorithm for MRI.  Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics).  11070 LNCS.
  • Hiasa Y, Otake Y, Takao M, Matsuoka T, Takashima K, Carass A, Prince JL, Sugano N, Sato Y (2018).  Cross-modality image synthesis from unpaired data using cyclegan: Effects of gradient consistency loss and training data size.  Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics).  11037 LNCS.
  • Lang A, Carass A, Jedynak BM, Solomon SD, Calabresi PA, Prince JL (2018).  Intensity inhomogeneity correction of SD-OCT data using macular flatspace.  Medical Image Analysis.  43.
  • Tolpadi AA, Stone ML, Carass A, Prince JL, Gomez AD (2018).  Inverse biomechanical modeling of the tongue via machine learning and synthetic training data.  Progress in Biomedical Optics and Imaging - Proceedings of SPIE.  10576.
  • Oguz I, Carass A, Pham DL, Roy S, Subbana N, Calabresi PA, Yushkevich PA, Shinohara RT, Prince JL (2018).  Dice overlap measures for objects of unknown number: Application to lesion segmentation.  Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics).  10670 LNCS.
  • Reaungamornrat S, Carass A, He Y, Saidha S, Calabresi PA, Prince JL (2018).  Inter-scanner variation independent descriptors for constrained diffeomorphic demons registration of retina OCT.  Progress in Biomedical Optics and Imaging - Proceedings of SPIE.  10574.
  • Shao M, Carass A, Li X, Dewey BE, Blitz AM, Prince JL, Ellingsen LM (2018).  Multi-atlas segmentation of the hydrocephalus brain using an adaptive ventricle atlas.  Progress in Biomedical Optics and Imaging - Proceedings of SPIE.  10578.
  • Goyal S, Zhao C, Jog A, Prince JL, Carass A (2018).  Improving self super resolution in magnetic resonance images.  Progress in Biomedical Optics and Imaging - Proceedings of SPIE.  10578.
  • Glaister J, Shao M, Li X, Carass A, Roy S, Blitz AM, Prince JL, Ellingsen LM (2018).  Deformable model reconstruction of the subarachnoid space.  Progress in Biomedical Optics and Imaging - Proceedings of SPIE.  10574.
  • Glaister J, Carass A, NessAiver T, Stough JV, Saidha S, Calabresi PA, Prince JL (2017).  Thalamus segmentation using multi-modal feature classification: Validation and pilot study of an age-matched cohort.  NeuroImage.  158.
  • Antony BJ, Kim BJ, Lang A, Carass A, Prince JL, Zack DJ (2017).  Automated segmentation of mouse OCT volumes (ASiMOV): Validation & clinical study of a light damage model.  PLoS ONE.  12(8).
  • Carass A, Roy S, Jog A, Cuzzocreo JL, Magrath E, Gherman A, Button J, Nguyen J, Bazin PL, Calabresi PA, Crainiceanu CM, Ellingsen LM, Reich DS, Prince JL, Pham DL (2017).  Longitudinal multiple sclerosis lesion segmentation data resource.  Data in Brief.  12.
  • Carass A, Roy S, Jog A, Cuzzocreo JL, Magrath E, Gherman A, Button J, Nguyen J, Prados F, Sudre CH, Jorge Cardoso M, Cawley N, Ciccarelli O, Wheeler-Kingshott CAM, Ourselin S, Catanese L, Deshpande H, Maurel P, Commowick O, Barillot C, Tomas-Fernandez X, Warfield SK, Vaidya S, Chunduru A, Muthuganapathy R, Krishnamurthi G, Jesson A, Arbel T, Maier O, Handels H, Iheme LO, Unay D, Jain S, Sima DM, Smeets D, Ghafoorian M, Platel B, Birenbaum A, Greenspan H, Bazin PL, Calabresi PA, Crainiceanu CM, Ellingsen LM, Reich DS, Prince JL, Pham DL (2017).  Longitudinal multiple sclerosis lesion segmentation: Resource and challenge.  NeuroImage.  148.
  • Chen M, Carass A, Jog A, Lee J, Roy S, Prince JL (2017).  Cross contrast multi-channel image registration using image synthesis for MR brain images.  Medical Image Analysis.  36.
  • Jog A, Carass A, Roy S, Pham DL, Prince JL (2017).  Random forest regression for magnetic resonance image synthesis.  Medical Image Analysis.  35.
  • Glaister J, Carass A, Pham DL, Butman JA, Prince JL (2017).  Automatic falx cerebri and tentorium cerebelli segmentation from magnetic resonance images.  Progress in Biomedical Optics and Imaging - Proceedings of SPIE.  10137.
  • Carass A, Shao M, Li X, Dewey BE, Blitz AM, Roy S, Pham DL, Prince JL, Ellingsen LM (2017).  Whole brain parcellation with pathology: Validation on ventriculomegaly patients.  Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics).  10530 LNCS.
  • Yun Y, Carass A, Lang A, Prince JL, Antony BJ (2017).  Collaborative SDOCT segmentation and analysis software.  Progress in Biomedical Optics and Imaging - Proceedings of SPIE.  10138.
  • He Y, Carass A, Yun Y, Zhao C, Jedynak BM, Solomon SD, Saidha S, Calabresi PA, Prince JL (2017).  Towards topological correct segmentation of macular OCT from cascaded FCNs.  Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics).  10554 LNCS.
  • Glaister J, Carass A, Pham DL, Butman JA, Prince JL (2017).  Falx cerebri segmentation via multi-atlas boundary fusion.  Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics).  10433 LNCS.
  • Jog A, Carass A, Roy S, Pham DL, Prince J (2017).  Random Forest Regression for Magnetic Resonance Image Synthesis.  Medical Image Analysis.  35.  475-488.
  • Zhao C, Carass A, Lee J, He Y, Prince JL (2017).  Whole brain segmentation and labeling from CT using synthetic MR images.  Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics).  10541 LNCS.
  • Dewey BE, Carass A, Blitz AM, Prince JL (2017).  Efficient multi-atlas registration using an intermediate template image.  Progress in Biomedical Optics and Imaging - Proceedings of SPIE.  10137.
  • Antony BJ, Carass A, Lang A, Kim BJ, Zack DJ, Prince JL (2017).  Longitudinal analysis of mouse SDOCT volumes.  Progress in Biomedical Optics and Imaging - Proceedings of SPIE.  10137.
  • Lee J, Carass A, Jog A, Zhao C, Prince JL (2017).  Multi-atlas-based CT synthesis from conventional MRI with patch-based refinement for MRI-based radiotherapy planning.  Progress in Biomedical Optics and Imaging - Proceedings of SPIE.  10133.
  • Lang A, Carass A, Bittner AK, Ying HS, Prince JL (2017).  Improving graph-based OCT segmentation for severe pathology in retinitis pigmentosa patients.  Progress in Biomedical Optics and Imaging - Proceedings of SPIE.  10137.
  • Zhao C, Carass A, Lee J, Jog A, Prince JL (2017).  A supervoxel based random forest synthesis framework for bidirectional MR/CT synthesis.  Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics).  10557 LNCS.
  • Huo Y, Plassard AJ, Carass A, Resnick SM, Pham DL, Prince JL, Landman BA (2016).  Consistent cortical reconstruction and multi-atlas brain segmentation.  NeuroImage.  138.
  • Lang A, Carass A, Jedynak BM, Solomon SD, Calabresi PA, Prince JL (2016).  Intensity inhomogeneity correction of macular OCT using N3 and retinal flatspace.  Proceedings - International Symposium on Biomedical Imaging.  2016-June.
  • Yang Z, Ye C, Bogovic JA, Carass A, Jedynak BM, Ying SH, Prince JL (2016).  Automated cerebellar lobule segmentation with application to cerebellar structural analysis in cerebellar disease.  NeuroImage.  127.
  • Antony BJ, Lang A, Swingle EK, Al-Louzi O, Carass A, Solomon S, Calabresi PA, Saidha S, Prince JL (2016).  Simultaneous segmentation of retinal surfaces and microcystic macular edema in SDOCT volumes.  Progress in Biomedical Optics and Imaging - Proceedings of SPIE.  9784.
  • Roy S, Carass A, Pacheco J, Bilgel M, Resnick SM, Prince JL, Pham DL (2016).  Temporal filtering of longitudinal brain magnetic resonance images for consistent segmentation.  NeuroImage: Clinical.  11.
  • Lang A, Carass A, Al-Louzi O, Bhargava P, Solomon SD, Calabresi PA, Prince JL (2016).  Combined registration and motion correction of longitudinal retinal OCT data.  Progress in Biomedical Optics and Imaging - Proceedings of SPIE.  9784.
  • Glaister J, Carass A, Stough JV, Calabresi PA, Prince JL (2016).  Thalamus parcellation using multi-modal feature classification and thalamic nuclei priors.  Progress in Biomedical Optics and Imaging - Proceedings of SPIE.  9784.
  • Abulnaga SM, Yang Z, Carass A, Kansal K, Jedynak BM, Onyike CU, Ying SH, Prince JL (2016).  A toolbox to visually explore cerebellar shape changes in cerebellar disease and dysfunction.  Progress in Biomedical Optics and Imaging - Proceedings of SPIE.  9785.
  • Zhao C, Carass A, Jog A, Prince JL (2016).  Effects of spatial resolution on image registration.  Progress in Biomedical Optics and Imaging - Proceedings of SPIE.  9784.
  • Liu L, Glaister J, Sun X, Carass A, Tran TD, Prince JL (2016).  Segmentation of thalamus from MR images via task-driven dictionary learning.  Progress in Biomedical Optics and Imaging - Proceedings of SPIE.  9784.
  • Yang Z, Abulnaga SM, Carass A, Kansal K, Jedynak BM, Onyike C, Ying SH, Prince JL (2016).  Landmark based shape analysis for cerebellar ataxia classification and cerebellar atrophy pattern visualization.  Progress in Biomedical Optics and Imaging - Proceedings of SPIE.  9784.
  • Roy S, Carass A, Pacheco J, Bilgel M, Resnick SM, Prince J, Pham DL (2016).  Temporal filtering of longitudinal brain magnetic resonance images for consistent segmentation.  NeuroImage: Clinical.  11.  264-275.
  • Li K, Ye C, Yang Z, Carass A, Ying SH, Prince JL (2016).  Quality assurance using outlier detection on an automatic segmentation method for the cerebellar peduncles.  Progress in Biomedical Optics and Imaging - Proceedings of SPIE.  9784.
  • Ellingsen LM, Roy S, Carass A, Blitz AM, Pham DL, Prince JL (2016).  Segmentation and labeling of the ventricular system in normal pressure hydrocephalus using patch-based tissue classification and multi-atlas labeling.  Progress in Biomedical Optics and Imaging - Proceedings of SPIE.  9784.
  • Huo Y, Carass A, Resnick SM, Pham DL, Prince JL, Landman BA (2016).  Combining multi-atlas segmentation with brain surface estimation.  Progress in Biomedical Optics and Imaging - Proceedings of SPIE.  9784.
  • Antony BJ, Chen M, Carass A, Jedynak BM, Al-Louzi O, Solomon SD, Saidha S, Calabresi PA, Prince JL (2016).  Voxel based morphometry in optical coherence tomography: Validation & core findings.  Progress in Biomedical Optics and Imaging - Proceedings of SPIE.  9788.
  • Yang Z, Ye C, Bogovic JA, Carass A, Jedynak B, Ying SH, Prince J (2016).  Automated cerebellar lobule segmentation with application to cerebellar structural analysis in cerebellar disease.  NeuroImage.  127.  435-444.
  • Huo Y, Plassard AJ, Carass A, Resnick SM, Pham DL, Prince J, Landman BA (2016).  Consistent cortical reconstruction and multi-atlas brain segmentation.  NeuroImage.  138.  197-210.
  • Jog A, Carass A, Prince JL (2016).  Self super-resolution for magnetic resonance images.  Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics).  9902 LNCS.
  • Bilgel M, Carass A, Resnick SM, Wong DF, Prince JL (2015).  Deformation field correction for spatial normalization of PET images.  NeuroImage.  119.
  • Roy S, He Q, Sweeney E, Carass A, Reich D, Prince J, Pham DL (2015).  Subject specific sparse dictionary learning for atlas based brain MRI segmentation.  IEEE Journal of Biomedical Health Informatics.  19(5).  1598-1609.
  • Roy S, He Q, Sweeney E, Carass A, Reich DS, Prince JL, Pham DL (2015).  Subject-Specific Sparse Dictionary Learning for Atlas-Based Brain MRI Segmentation.  IEEE Journal of Biomedical and Health Informatics.  19(5).
  • Jog A, Carass A, Roy S, Pham DL, Prince JL (2015).  MR image synthesis by contrast learning on neighborhood ensembles.  Medical Image Analysis.  24(1).
  • Mendrik AM, Vincken KL, Kuijf HJ, Breeuwer M, Bouvy WH, De Bresser J, Alansary A, De Bruijne M, Carass A, El-Baz A, Jog A, Katyal R, Khan AR, Van Der Lijn F, Mahmood Q, Mukherjee R, Van Opbroek A, Paneri S, Pereira S, Persson M, Rajchl M, Sarikaya D, Smedby Ö, Silva CA, Vrooman HA, Vyas S, Wang C, Zhao L, Biessels GJ, Viergever MA (2015).  MRBrainS Challenge: Online Evaluation Framework for Brain Image Segmentation in 3T MRI Scans.  Computational Intelligence and Neuroscience.  2015.
  • Carass A, Lang A, Hauser M, Calabresi PA, Ying HS, Prince JL (2015).  Multiple-object geometric deformable model for segmentation of macular OCT: Errata.  Biomedical Optics Express.  6(4).
  • Swingle EK, Lang A, Carass A, Al-Louzi O, Saidha S, Prince JL, Calabresi PA (2015).  Segmentation of microcystic macular edema in Cirrus OCT scans with an exploratory longitudinal study.  Progress in Biomedical Optics and Imaging - Proceedings of SPIE.  9417.
  • Lang A, Carass A, Al-Louzi O, Bhargava P, Ying HS, Calabresi PA, Prince JL (2015).  Longitudinal graph-based segmentation of macular OCT using fundus alignment.  Progress in Biomedical Optics and Imaging - Proceedings of SPIE.  9413.
  • Chen M, Jog A, Carass A, Prince JL (2015).  Using image synthesis for multi-channel registration of different image modalities.  Progress in Biomedical Optics and Imaging - Proceedings of SPIE.  9413.
  • Jog A, Carass A, Pham DL, Prince JL (2015).  Multi-output decision trees for lesion segmentation in multiple sclerosis.  Progress in Biomedical Optics and Imaging - Proceedings of SPIE.  9413.
  • Roy S, Carass A, Prince JL, Pham DL (2015).  Longitudinal patch-based segmentation of multiple sclerosis white matter lesions.  Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics).  9352.
  • Jog A, Carass A, Roy S, Pham DL, Prince J (2015).  MR Image Synthesis by Contrast Learning On Neighborhood Ensembles.  Medical Image Analysis.  24(1).  63-76.
  • Lang A, Carass A, Swingle EK, Al-Louzi O, Bhargava P, Saidha S, Ying HS, Calabresi PA, Prince J (2015).  Automatic segmentation of microcystic macular edema in OCT.  Biomedical Optics Express.  6(1).  155-169.
  • Bilgel M, Carass A, Resnick SM, Wong DF, Prince J (2015).  Deformation field correction for spatial normalization of PET images.  NeuroImage.  119.  152-163.
  • Lang A, Carass A, Bittner AK, Ying HS, Prince J (2015).  Automated segmentation of macular SD-OCT scans of retinitis pigmentosa patients shows regional patterns of foveal inner retinal thickening that correlate with visual function.  Investigative Ophthalmology & Visual Science.  56(7).  3811-3811.
  • Jog A, Carass A, Pham DL, Prince JL (2015).  Tree-encoded conditional random fields for image synthesis.  Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics).  9123.
  • Bhargava P, Lang A, Al-Louzi O, Carass A, Prince J, Calabresi PA, Saidha S (2015).  Applying an open-source segmentation algorithm to different OCT devices in multiple sclerosis patients and healthy controls: implications for clinical trials.  Multiple sclerosis international.  2015.
  • Bhargava P, Lang A, Al-Louzi O, Carass A, Prince J, Calabresi PA, Saidha S (2015).  Applying an Open-Source Segmentation Algorithm to Different OCT Devices in Multiple Sclerosis Patients and Healthy Controls: Implications for Clinical Trials.  Multiple Sclerosis International.  2015.
  • Carass A, Lang A, Hauser M, Calabresi PA, Ying HS, Prince J (2015).  Multiple-object geometric deformable model for segmentation of macular OCT: errata.  Biomedical Optics Express.  6(4).  1351-1352.
  • Mendrik A, Vincken K, Kuijf H, Breeuwer M, Bouvy W, de Bresser J, Alansary A, de Bruijn M, Carass A, El-Baz A, others (2015).  MRBrainS Challenge: Online Evaluation Framework for Brain Image Segmentation in 3T MRI Scans.  Computational Intelligence and Neuroscience.
  • Mendrik AM, Vincken KL, Kuijf HJ, Breeuwer M, Bouvy WH, de Bresser J, Alansary A, de Bruijne M, Carass A, El-Baz A, Jog A, Katyal R, Khan AR, Fedde van der Lijn , Mahmood Q, Mukherjee R, van Opbroek A, Paneri S, Pereira S, Persson M, Rajchl M, Sarika... (2015).  Applying an Open-Source Segmentation Algorithm to Different OCT Devices in Multiple Sclerosis Patients and Healthy Controls: Implications for Clinical Trials.  Computational Intelligence and Neuroscience.  2015.
  • Bhargava P, Lang A, Al-Louzi O, Carass A, Prince J, Calabresi PA, Saidha S (2015).  Applying an Open-Source Segmentation Algorithm to Different OCT Devices in Multiple Sclerosis Patients and Healthy Controls: Implications for Clinical Trials.  Multiple Sclerosis International.  2015.
  • Lang A, Carass A, Swingle EK, Al-Louzi O, Bhargava P, Saidha S, Ying HS, Calabresi PA, Prince JL (2015).  Automatic segmentation of microcystic macular edema in OCT.  Biomedical Optics Express.  6(1).
  • Jog A, Carass A, Pham DL, Prince JL (2015).  Tree-Encoded Conditional Random Fields for Image Synthesis.  Information processing in medical imaging : proceedings of the ... conference.  24.
  • Jog A, Carass A, Pham DL, Prince JL (2014).  Random forest flair reconstruction from T1, T2, and PD-weighted MRI.  2014 IEEE 11th International Symposium on Biomedical Imaging, ISBI 2014.
  • Chen M, Lang A, Ying HS, Calabresi PA, Prince JL, Carass A (2014).  Analysis of macular OCT images using deformable registration.  Biomedical Optics Express.  5(7).
  • Carass A, Lang A, Hauser M, Calabresi PA, Ying HS, Prince JL (2014).  Multiple-object geometric deformable model for segmentation of macular OCT.  Biomedical Optics Express.  5(4).
  • Roy S, He Q, Carass A, Jog A, Cuzzocreo JL, Reich DS, Prince J, Pham D (2014).  Example based lesion segmentation.  Progress in Biomedical Optics and Imaging - Proceedings of SPIE.  9034.
  • Shiee N, Bazin PL, Cuzzocreo JL, Ye C, Kishore B, Carass A, Calabresi PA, Reich DS, Prince JL, Pham DL (2014).  Reconstruction of the human cerebral cortex robust to white matter lesions: Method and validation.  Human Brain Mapping.  35(7).
  • Ye C, Carass A, Murano E, Stone M, Prince JL (2014).  A bayesian approach to distinguishing interdigitated muscles in the tongue from limited diffusion weighted imaging.  Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics).  8677.
  • Jog A, Carass A, Prince JL (2014).  Improving magnetic resonance resolution with supervised learning.  2014 IEEE 11th International Symposium on Biomedical Imaging, ISBI 2014.
  • Roy S, Carass A, Prince JL, Pham DL (2014).  Subject specific sparse dictionary learning for atlas based brain mri segmentation.  Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics).  8679.
  • Lang A, Carass A, Calabresi PA, Ying HS, Prince JL (2014).  An adaptive grid for graph-based segmentation in retinal OCT.  Progress in Biomedical Optics and Imaging - Proceedings of SPIE.  9034.
  • Swingle EK, Lang A, Carass A, Ying HS, Calabresi PA, Prince JL (2014).  Microcystic macular edema detection in retina OCT images.  Progress in Biomedical Optics and Imaging - Proceedings of SPIE.  9038.
  • Stough JV, Glaister J, Ye C, Ying SH, Prince JL, Carass A (2014).  Automatic method for thalamus parcellation using multi-modal feature classification.  Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics).  8675 LNCS(PART 3).
  • Stough JV, Glaister J, Ye C, Ying SH, Prince JL, Carass A (2014).  Automatic method for thalamus parcellation using multi-modal feature classification..  Medical image computing and computer-assisted intervention : MICCAI ... International Conference on Medical Image Computing and Computer-Assisted Intervention.  17(Pt 3).
  • Yang Z, Zhong S, Carass A, Ying SH, Prince JL (2014).  Deep learning for cerebellar ataxia classification and functional score regression.  Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics).  8679.
  • Shiee N, Bazin P, Cuzzocreo JL, Ye C, Kishore B, Carass A, Calabresi PA, Reich D, Prince J, Pham DL (2014).  Reconstruction of the human cerebral cortex robust to white matter lesions: Method and validation.  Human Brain Mapping.  35(7).  3385-3401.
  • Chen M, Lang A, Ying HS, Calabresi PA, Prince J, Carass A (2014).  Analysis of macular OCT images using deformable registration.  Biomedical Optics Express.  5(7).  2196-2214.
  • Roy S, Carass A, Jog A, Prince JL, Lee J (2014).  MR to CT registration of brains using image synthesis.  Progress in Biomedical Optics and Imaging - Proceedings of SPIE.  9034.
  • Roy S, Wang W, Carass A, Prince J, Butman JA, Pham DL (2014).  PET Attenuation Correction Using Synthetic CT from Ultrashort Echo-Time MR Imaging.  Journal of Nuclear Medicine.  55(12).  2071-2077.
  • Bilgel M, Carass A, Resnick SM, F.wong D, Prince JL (2014).  Deformation field correction for spatial normalization of PET images using a population-derived partial least squares model.  Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics).  8679.
  • Carass A, Lang A, Hauser M, Calabresi PA, Ying HS, Prince J (2014).  Multiple-object geometric deformable model for segmentation of macular OCT.  Biomedical Optics Express.  5(4).  1062-1074.
  • Roy S, Wang WT, Carass A, Prince JL, Butman JA, Pham DL (2014).  PET attenuation correction using synthetic CT from ultrashort echo-time MR imaging.  Journal of Nuclear Medicine.  55(12).
  • Chen M, Carass A, Oh J, Nair G, Pham DL, Reich DS, Prince JL (2013).  Automatic magnetic resonance spinal cord segmentation with topology constraints for variable fields of view.  NeuroImage.  83.
  • Roy S, Carass A, Prince JL (2013).  Magnetic resonance image example-based contrast synthesis.  IEEE Transactions on Medical Imaging.  32(12).
  • Roy S, Jog A, Carass A, Prince JL (2013).  Atlas based intensity transformation of brain MR images.  Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics).  8159 LNCS.
  • Jog A, Roy S, Carass A, Prince JL (2013).  Magnetic resonance image synthesis through patch regression.  Proceedings - International Symposium on Biomedical Imaging.
  • Roy S, Carass A, Shiee N, Pham DL, Calabresi P, Reich D, Prince JL (2013).  Longitudinal intensity normalization in the presence of multiple sclerosis lesions.  Proceedings - International Symposium on Biomedical Imaging.
  • Chen M, Lang A, Sotirchos E, Ying HS, Calabresi PA, Prince JL, Carass A (2013).  Deformable registration of macular oct using a-mode scan similarity.  Proceedings - International Symposium on Biomedical Imaging.
  • Roy S, Carass A, Prince JL (2013).  Patch based intensity normalization of brain MR images.  Proceedings - International Symposium on Biomedical Imaging.
  • Yang Z, Carass A, Prince JL (2013).  Covariance shrinking in active shape models with application to gyral labeling of the cerebral cortex.  Proceedings - International Symposium on Biomedical Imaging.
  • Roy S, Carass A, Prince JL (2013).  Longitudinal intensity normalization of magnetic resonance images using patches.  Progress in Biomedical Optics and Imaging - Proceedings of SPIE.  8669.
  • Yang Z, Bogovic JA, Carass A, Ye M, Searson PC, Prince JL (2013).  Automatic cell segmentation in fluorescence images of conuent cell monolayers using multi-object geometric deformable model.  Progress in Biomedical Optics and Imaging - Proceedings of SPIE.  8669.
  • Chen M, Carass A, Reich DS, Calabresi PA, Pham D, Prince JL (2013).  Voxel-wise displacement as independent features in classification of multiple sclerosis.  Progress in Biomedical Optics and Imaging - Proceedings of SPIE.  8669.
  • Bilgel M, Roy S, Carass A, Nyquist PA, Prince JL (2013).  Automated anatomical labeling of the cerebral arteries using belief propagation.  Progress in Biomedical Optics and Imaging - Proceedings of SPIE.  8669.
  • Jog A, Roy S, Carass A, Prince JL (2013).  Pulse sequence based multi-acquisition MR intensity normalization.  Progress in Biomedical Optics and Imaging - Proceedings of SPIE.  8669.
  • Lang A, Carass A, Sotirchos E, Calabresi P, Prince JL (2013).  Segmentation of retinal OCT images using a random forest classifier.  Progress in Biomedical Optics and Imaging - Proceedings of SPIE.  8669.
  • Chen M, Carass A, Oh J, Nair G, Pham DL, Reich D, Prince J (2013).  Automatic magnetic resonance spinal cord segmentation with topology constraints for variable fields of view.  NeuroImage.  83.  1051-1062.
  • Lang A, Carass A, Hauser M, Sotirchos ES, Calabresi PA, Ying HS, Prince J (2013).  Retinal layer segmentation of macular OCT images using boundary classification.  Biomedical Optics Express.  4(7).  1133-1152.
  • Roy S, Carass A, Prince J (2013).  Magnetic Resonance Image Example Based Contrast Synthesis.  Medical Imaging, IEEE Transactions on.  32(12).  2348-2363.
  • Lang A, Carass A, Hauser M, Sotirchos ES, Calabresi PA, Ying HS, Prince JL (2013).  Retinal layer segmentation of macular OCT images using boundary classification.  Biomedical Optics Express.  4(7).
  • Landman BA, Bogovic JA, Carass A, Chen M, Roy S, Shiee N, Yang Z, Kishore B, Pham D, Bazin P, others (2013).  System for Integrated Neuroimaging Analysis and Processing of Structure.  Neuroinformatics.  11(1).  91-103.
  • Landman BA, Bogovic JA, Carass A, Chen M, Roy S, Shiee N, Yang Z, Kishore B, Pham D, Bazin PL, Resnick SM, Prince JL (2013).  System for integrated neuroimaging analysis and processing of structure.  Neuroinformatics.  11(1).
  • Yang Z, Carass A, Prince JL (2012).  Automatic sulcal curve extraction with MRF based shape prior.  Proceedings - International Symposium on Biomedical Imaging.
  • Unschuld PG, Edden RAE, Carass A, Liu X, Shanahan M, Wang X, Oishi K, Brandt J, Bassett SS, Redgrave GW, Margolis RL, van Zijl PCM, Barker PB, Ross CA (2012).  Brain metabolite alterations and cognitive dysfunction in early Huntington's disease.  Movement Disorders.  27(7).
  • Unschuld PG, Edden R, Carass A, Liu X, Shanahan M, Wang X, Oishi K, Brandt J, Bassett SS, Redgrave GW, Margolis RL, van Zijl P, Barker PB, Ross CA (2012).  Brain metabolite alterations and cognitive dysfunction in early Huntington's disease.  Wiley Subscription Services, Inc., A Wiley Company.  27(2).  895-902.
  • Yang Z, Carass A, Chen C, Prince JL (2012).  Simultaneous cortical surface labeling and sulcal curve extraction.  Progress in Biomedical Optics and Imaging - Proceedings of SPIE.  8314.
  • Liu X, Bazin PL, Carass A, Prince J (2012).  Topology preserving brain tissue segmentation using graph cuts.  Proceedings of the Workshop on Mathematical Methods in Biomedical Image Analysis.
  • Roy S, Carass A, Bazin PL, Resnick S, Prince JL (2012).  Consistent segmentation using a Rician classifier.  Medical Image Analysis.  16(2).
  • Roy S, Carass A, Bazin P, Resnick S, Prince J (2012).  Consistent segmentation using a Rician classifier.  Medical Image Analysis.  16(2).  524-535.
  • Roy S, Carass A, Prince JL (2011).  Compressed sensing based intensity non-uniformity correction.  Proceedings - International Symposium on Biomedical Imaging.
  • Chen M, Carass A, Cuzzocreo J, Bazin PL, Reich DS, Prince JL (2011).  Topology preserving automatic segmentation of the spinal cord in magnetic resonance images.  Proceedings - International Symposium on Biomedical Imaging.
  • Roy S, Carass A, Prince J (2011).  A compressed sensing approach for MR tissue contrast synthesis..  Information processing in medical imaging : proceedings of the ... conference.  22.
  • Roy S, Carass A, Prince J (2011).  A compressed sensing approach for MR tissue contrast synthesis.  Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics).  6801 LNCS.
  • Carass A, Cuzzocreo J, Wheeler MB, Bazin PL, Resnick SM, Prince JL (2011).  Simple paradigm for extra-cerebral tissue removal: Algorithm and analysis.  NeuroImage.  56(4).
  • Roy S, Carass A, Bazin PL, Prince JL (2011).  Intensity inhomogeneity correction of magnetic resonance images using patches.  Progress in Biomedical Optics and Imaging - Proceedings of SPIE.  7962.
  • Chen M, Carass A, Bogovic J, Bazin PL, Prince JL (2011).  Distance transforms in multi channel MR image registration.  Progress in Biomedical Optics and Imaging - Proceedings of SPIE.  7962.
  • Huang H, Prince JL, Mishra V, Carass A, Landman B, Park DC, Tamminga C, King R, Miller MI, van Zijl PCM, Mori S (2011).  A framework on surface-based connectivity quantification for the human brain.  Journal of Neuroscience Methods.  197(2).
  • Carass A, Cuzzocreo J, Wheeler MB, Bazin P, Resnick SM, Prince J (2011).  Simple paradigm for extra-cerebral tissue removal: Algorithm and analysis.  NeuroImage.  56(4).  1982-1992.
  • Huang H, Prince J, Mishra V, Carass A, Landman B, Park DC, Tamminga C, King R, Miller M, van Zijl P, others (2011).  A framework on surface-based connectivity quantification for the human brain.  Journal of Neuroscience Methods.  197(2).  324-332.
  • Roy S, Carass A, Prince JL (2010).  Synthesizing MR contrast and resolution through a patch matching technique.  Progress in Biomedical Optics and Imaging - Proceedings of SPIE.  7623(PART 1).
  • Thambisetty M, Wan J, Carass A, An Y, Prince JL, Resnick SM (2010).  Longitudinal changes in cortical thickness associated with normal aging.  NeuroImage.  52(4).
  • Covington K, McCreedy ES, Chen M, Carass A, Aucoin N, Landman BA (2010).  Interfaces and integration of medical image analysis frameworks: Challenges and opportunities.  Proceedings of the 2010 Biomedical Science and Engineering Conference, BSEC 2010: Biomedical Research and Analysis in Neuroscience, BRAiN.
  • Roy S, Carass A, Shiee N, Pham DL, Prince JL (2010).  MR contrast synthesis for lesion segmentation.  2010 7th IEEE International Symposium on Biomedical Imaging: From Nano to Macro, ISBI 2010 - Proceedings.
  • Lucas BC, Bogovic JA, Carass A, Bazin PL, Prince JL, Pham DL, Landman BA (2010).  The Java Image Science Toolkit (JIST) for rapid prototyping and publishing of neuroimaging software.  Neuroinformatics.  8(1).
  • Thambisetty M, Wan J, Carass A, An Y, Prince J, Resnick SM (2010).  Longitudinal changes in cortical thickness associated with normal aging.  Neuroimage.  52(4).  1215-1223.
  • Lucas BC, Bogovic JA, Carass A, Bazin P, Prince J, Pham DL, Landman BA (2010).  The Java Image Science Toolkit (JIST) for rapid prototyping and publishing of neuroimaging software.  Neuroinformatics.  8(1).  5-17.
  • Roy S, Carass A, Bazin PL, Prince JL (2009).  A rician mixture model classification algorithm for magnetic resonance images.  Proceedings - 2009 IEEE International Symposium on Biomedical Imaging: From Nano to Macro, ISBI 2009.
  • Landman B, Lucas B, Bogovic J, Carass A, Prince J (2009).  A rapid prototyping environment for neuroimaging in java.  Neuroimage.  47.  S58.
  • Bogovic JA, Carass A, Wan J, Landman BA, Prince JL (2008).  Automatically identifying white matter tracts using cortical labels.  2008 5th IEEE International Symposium on Biomedical Imaging: From Nano to Macro, Proceedings, ISBI.
  • Wan J, Carass A, Resnick SM, Prince JL (2008).  Automated reliable labeling of the cortical surface.  2008 5th IEEE International Symposium on Biomedical Imaging: From Nano to Macro, Proceedings, ISBI.
  • Roy S, Agarwal H, Carass A, Bai Y, Pham DL, Prince JL (2008).  Fuzzy c-means with variable compactness.  2008 5th IEEE International Symposium on Biomedical Imaging: From Nano to Macro, Proceedings, ISBI.
  • Carass A, Wheeler MB, Cuzzocreo J, Bazin PL, Bassett SS, Prince JL (2007).  A joint registration and segmentation approach to skull stripping.  2007 4th IEEE International Symposium on Biomedical Imaging: From Nano to Macro - Proceedings.
  • Anbazhagan P, Carass A, Bazin PL, Prince JL (2006).  Automatic estimation of midsagittal plane and AC-PC alignment based on nonrigid registration.  2006 3rd IEEE International Symposium on Biomedical Imaging: From Nano to Macro - Proceedings.  2006.
Book Chapters
  • Roy S, Carass A, Prince J (2011).  A compressed sensing approach for MR tissue contrast synthesis.  Information Processing in Medical Imaging.  Springer Berlin Heidelberg.  371-383.
Conference Proceedings
  • Yang Z, Abulnaga SM, Carass A, Kansal K, Jedynak B, Onyike C, Ying SH, Prince J (2016).  Landmark based shape analysis for cerebellar ataxia classification and cerebellar atrophy pattern visualization.  SPIE Medical Imaging.  97840P-97840P.
  • Ellingsen L, Roy S, Carass A, Blitz AM, Pham DL, Prince J (2016).  Segmentation and labeling of the ventricular system in normal pressure hydrocephalus using patch-based tissue classification and multi-atlas labeling.  SPIE Medical Imaging.  97840G-97840G.
  • Liu L, Glaister J, Sun X, Carass A, Tran TD, Prince J (2016).  Segmentation of thalamus from MR images via task-driven dictionary learning.  SPIE Medical Imaging.  97843H-97843H.
  • Lang A, Carass A, Jedynak B, Solomon SD, Calabresi PA, Prince J (2016).  Intensity inhomogeneity correction of macular OCT using N3 and retinal flatspace.  Biomedical Imaging (ISBI), 2016 IEEE 13th International Symposium on.  197-200.
  • Antony BJ, Chen M, Carass A, Jedynak B, Al-Louzi O, Solomon S, Saidha S, Calabresi PA, Prince J (2016).  Voxel based morphometry in optical coherence tomography: validation and core findings.  SPIE Medical Imaging.  97880P-97880P.
  • Zhao C, Carass A, Jog A, Prince J (2016).  Effects of spatial resolution on image registration.  SPIE Medical Imaging.  97840Y-97840Y.
  • Glaister J, Carass A, Stough JV, Calabresi PA, Prince J (2016).  Thalamus parcellation using multi-modal feature classification and thalamic nuclei priors.  SPIE Medical Imaging.  97843J-97843J.
  • Huo Y, Carass A, Resnick SM, Pham DL, Prince J, Landman BA (2016).  Combining multi-atlas segmentation with brain surface estimation.  SPIE Medical Imaging.  97840E-97840E.
  • Lang A, Carass A, Al-Louzi O, Bhargava P, Solomon SD, Calabresi PA, Prince J (2016).  Combined registration and motion correction of longitudinal retinal OCT data.  SPIE Medical Imaging.  97840X-97840X.
  • Li K, Ye C, Yang Z, Carass A, Ying SH, Prince J (2016).  Quality assurance using outlier detection on an automatic segmentation method for the cerebellar peduncles.  SPIE Medical Imaging.  97841H-97841H.
  • Antony BJ, Lang A, Swingle EK, Al-Louzi O, Carass A, Solomon S, Calabresi PA, Saidha S, Prince J (2016).  Simultaneous segmentation of retinal surfaces and microcystic macular edema in SDOCT volumes.  SPIE Medical Imaging.  97841C-97841C.
  • Abulnaga S, Yang Z, Carass A, Kansal K, Jedynak B, Onyike CU, Ying SH, Prince J (2016).  A toolbox to visually explore cerebellar shape changes in cerebellar disease and dysfunction.  SPIE Medical Imaging.  97852P-97852P.
  • Jog A, Carass A, Pham DL, Prince J (2015).  Multi-output decision trees for lesion segmentation in multiple sclerosis.  SPIE Medical Imaging.  94131C-94131C-6.
  • Roy S, Carass A, Prince J, Pham DL (2015).  Longitudinal Patch-Based Segmentation of Multiple Sclerosis White Matter Lesions.  Machine Learning in Medical Imaging.  Springer International Publishing.  194-202.
  • Jog A, Carass A, Pham DL, Prince J (2015).  Tree-Encoded Conditional Random Fields for Image Synthesis.  Information Processing in Medical Imaging.  733-745.
  • Lang A, Carass A, Bittner AK, Ying HS, Prince J (2015).  Automated segmentation of macular SD-OCT scans of retinitis pigmentosa patients shows regional patterns of foveal inner retinal thickening that correlate with visual function.  Investigative Ophthalmology & Visual Science.  56(7).  3811-3811.
  • Swingle EK, Lang A, Carass A, Al-Louzi O, Saidha S, Prince J, Calabresi PA (2015).  Segmentation of microcystic macular edema in Cirrus OCT scans with an exploratory longitudinal study.  SPIE Medical Imaging.  94170P-94170P-9.
  • Lang A, Carass A, Al-Louzi O, Bhargava P, Ying HS, Calabresi PA, Prince J (2015).  Longitudinal graph-based segmentation of macular OCT using fundus alignment.  SPIE Medical Imaging.  94130M-94130M-8.
  • Al-Louzi O, Button J, Lang A, Bhargava P, Newsome S, Carass A, Balcer L, Frohman E, Prince J, Calabresi P, others (2015).  Disease modifying therapies modulate retinal layer atrophy in multiple sclerosis: a longitudinal study.  MULTIPLE SCLEROSIS JOURNAL.  21.  514-515.
  • Roy S, Carass A, Prince J, Pham DL (2015).  Longitudinal Patch-Based Segmentation of Multiple Sclerosis White Matter Lesions.  International Workshop on Machine Learning in Medical Imaging.  194-202.
  • Chen M, Jog A, Carass A, Prince J (2015).  Using image synthesis for multi-channel registration of different image modalities.  SPIE Medical Imaging.  94131Q-94131Q-7.
  • Lang A, Carass A, Calabresi PA, Ying HS, Prince J (2014).  An adaptive grid for graph-based segmentation in retinal OCT.  SPIE Medical Imaging.  903402-903402.
  • Roy S, He Q, Carass A, Jog A, Cuzzocreo JL, Reich DS, Prince J, Pham D (2014).  Example based lesion segmentation.  SPIE Medical Imaging.  90341Y-90341Y.
  • Roy S, Carass A, Jog A, Prince J, Lee J (2014).  MR to CT registration of brains using image synthesis.  SPIE Medical Imaging.  903419-903419.
  • Jog A, Carass A, Prince J (2014).  Improving magnetic resonance resolution with supervised learning.  Biomedical Imaging (ISBI), 2014 IEEE 11th International Symposium on.  987-990.
  • Roy S, Carass A, Prince J, Pham DL (2014).  Subject Specific Sparse Dictionary Learning for Atlas Based Brain MRI Segmentation.  Machine Learning in Medical Imaging.  248-255.
  • Jog A, Carass A, Pham DL, Prince J (2014).  Random forest FLAIR reconstruction from T 1, T 2, and P D-weighted MRI.  Biomedical Imaging (ISBI), 2014 IEEE 11th International Symposium on.  1079-1082.
  • Ye C, Carass A, Murano E, Stone M, Prince J (2014).  A Bayesian Approach to Distinguishing Interdigitated Muscles in the Tongue from Limited Diffusion Weighted Imaging.  Bayesian and grAphical Models for Biomedical Imaging.  13-24.
  • Stough JV, Glaister J, Ye C, Ying SH, Prince J, Carass A (2014).  Automatic Method for Thalamus Parcellation Using Multi-modal Feature Classification.  Medical Image Computing and Computer-Assisted Intervention-MICCAI 2014.  169-176.
  • Bilgel M, Carass A, Resnick SM, Wong DF, Prince J (2014).  Deformation field correction for spatial normalization of PET images using a population-derived partial least squares model.  Machine Learning in Medical Imaging.  198-206.
  • Swingle EK, Lang A, Carass A, Ying HS, Calabresi PA, Prince J (2014).  Microcystic macular edema detection in retina OCT images.  SPIE Medical Imaging.  90380G-90380G.
  • Yang Z, Zhong S, Carass A, Ying SH, Prince J (2014).  Deep Learning for Cerebellar Ataxia Classification and Functional Score Regression.  Machine Learning in Medical Imaging.  68-76.
  • Bhargava P, Lang A, Al-Louzi O, Carass A, Saidha S, Prince J, Calabresi P (2014).  Cross-platform comparison of retinal layers in multiple sclerosis utilizing a novel open-source optical coherence tomography automated segmentation algorithm.  Cooperative Meeting of the Consortium of Multiple Sclerosis Centers (CMSC) and Americas Committee for Treatment and Research in Multiple Sclerosis (ACTRMS).
  • Bhargava P, Lang A, Al-Louzi O, Carass A, Saidha S, Prince J, Calabresi P (2014).  Cross-Platform Comparison of Retinal Neuronal Layers in Multiple Sclerosis Utilizing a Novel Open-Source Optical Coherence Tomography Automated Segmentation Algorithm (P2. 256).  American Academy of Neurology 66th Annual Meeting, Philadelphia, PA. Abstract in Neurology.  82(10 Supplement).  P2-256.
  • Roy S, Carass A, Shiee N, Pham DL, Calabresi P, Reich D, Prince J (2013).  Longitudinal intensity normalization in the presence of multiple sclerosis lesions.  Biomedical Imaging (ISBI), 2013 IEEE 10th International Symposium on.  1384-1387.
  • Chen M, Carass A, Reich D, Calabresi PA, Pham D, Prince J (2013).  Voxel-wise displacement as independent features in classification of multiple sclerosis.  Proceedings of SPIE Medical Imaging.  86690K-86690K.
  • Lang A, Carass A, Sotirchos E, Calabresi P, Prince J (2013).  Segmentation of retinal OCT images using a random forest classifier.  Proceedings of SPIE Medical Imaging.  86690R-86690R.
  • Yang Z, Bogovic JA, Ye C, Carass A, Ying S, Prince J (2013).  Automated Cerebellar Lobule Segmentation using Graph Cuts.  MICCAI Challenge Workshop on Segmentation: Algorithms, Theory, and Applications (SATA).
  • Chen M, Lang A, Sotirchos E, Ying HS, Calabresi PA, Prince J, Carass A (2013).  Deformable registration of macular OCT using A-mode scan similarity.  Biomedical Imaging (ISBI), 2013 IEEE 10th International Symposium on.  476-479.
  • Yang Z, Carass A, Prince J (2013).  Covariance shrinking in active shape models with application to gyral labeling of the cerebral cortex.  Biomedical Imaging (ISBI), 2013 IEEE 10th International Symposium on.  1018-1021.
  • Roy S, Jog A, Carass A, Prince J (2013).  Atlas Based Intensity Transformation of Brain MR Images.  Multimodal Brain Image Analysis.  Springer International Publishing.  51-62.
  • Roy S, Carass A, Prince J (2013).  Longitudinal intensity normalization of magnetic resonance images using patches.  Proceedings of SPIE Medical Imaging.  86691J-86691J.
  • Yang Z, Bogovic JA, Carass A, Ye M, Searson P, Prince J (2013).  Automatic cell segmentation in fluorescence images of confluent cell monolayers using multi-object geometric deformable model.  Proceedings of SPIE Medical Imaging.  866904-866904.
  • Roy S, Carass A, Prince J (2013).  Patch based intensity normalization of brain MR images.  Biomedical Imaging (ISBI), 2013 IEEE 10th International Symposium on.  342-345.
  • Jog A, Roy S, Carass A, Prince J (2013).  Magnetic resonance image synthesis through patch regression.  Biomedical Imaging (ISBI), 2013 IEEE 10th International Symposium on.  350-353.
  • Bilgel M, Roy S, Carass A, Nyquist PA, Prince J (2013).  Automated anatomical labeling of the cerebral arteries using belief propagation.  Proceedings of SPIE Medical Imaging.  866918-866918.
  • Jog A, Roy S, Carass A, Prince J (2013).  Pulse sequence based multi-acquisition MR intensity normalization.  Proceedings of SPIE Medical Imaging.  86692H-86692H.
  • Rousset O, Bazin P, Carass A, Enders C, Harsha A, Pham DL, Resnick S, Wong D (2012).  In vivo amyloid deposition in the aging brain: methodological considerations for partial volume correction.  Journal of Cerebral Blood Flow & Metabolism.  32.  S128-S191.
  • Yang Z, Carass A, Chen C, Prince J (2012).  Simultaneous cortical surface labeling and sulcal curve extraction.  Proceedings of SPIE Medical Imaging.  831414-831414.
  • Liu X, Bazin P, Carass A, Prince J (2012).  Topology preserving brain tissue segmentation using graph cuts.  Mathematical Methods in Biomedical Image Analysis (MMBIA), 2012 IEEE Workshop on.  185-190.
  • Yang Z, Carass A, Prince J (2012).  Automatic sulcal curve extraction with MRF based shape prior.  Biomedical Imaging (ISBI), 2012 9th IEEE International Symposium on.  418-421.
  • Bazin P, Shiee N, Carass A, Chen M, Bogovic J, Reich D, Landman BA, McAuliffe M, Prince J, Pham DL (2011).  Anatomical Segmentation of Cortical Surfaces, Sub-cortical Structures and Major White Matter Tracts from Brain Structural and Diffusion MRI in MIPAV.  Annual Meeting of the ESMRMB.
  • Carass A, Chen M, Cuzzocreo J, Prince J (2011).  "Skull stripping influence on cortical surface reconstruction: a landmark validation.  Annual Meeting of the Organization for Human Brain Mapping.
  • Chen M, Carass A, Bogovic J, Bazin P, Prince J (2011).  Distance transforms in multi channel MR image registration.  Proceedings of SPIE Medical Imaging.  79621D-79621D.
  • Roy S, Carass A, Prince J (2011).  Compressed sensing based intensity non-uniformity correction.  Biomedical Imaging: From Nano to Macro, 2011 IEEE International Symposium on.  101-104.
  • Roy S, Carass A, Bazin P, Prince J (2011).  Intensity inhomogeneity correction of magnetic resonance images using patches.  Proceedings of SPIE Medical Imaging.  79621F-79621F.
  • Chen M, Carass A, Cuzzocreo J, Bazin P, Reich D, Prince J (2011).  Topology preserving automatic segmentation of the spinal cord in magnetic resonance images.  Biomedical Imaging: From Nano to Macro, 2011 IEEE International Symposium on.  1737-1740.
  • Covington K, McCreedy ES, Chen M, Carass A, Aucoin N, Landman BA (2010).  Interfaces and integration of medical image analysis frameworks: Challenges and Opportunities.  Biomedical Sciences and Engineering Conference (BSEC) 2010.  1-4.
  • Landman BA, Covington K, McCreedy ES, Chen M, Carass A, Aucoin N, Prince J, Pham DL (2010).  An Open-Source Integrative Framework for Biomedical Image Analysis.  Biomedical Informatics without Borders.
  • Vogelstein J, Bogovic J, Carass A, Gray WR, Prince J, Landman B, Pham D, Ferrucci L, Resnick SM, Priebe C, others (2010).  Graph-Theoretical Methods for Statistical Inference on MR Connectome Data.  Annual Meeting of the Organization for Human Brain Mapping, Barcelona.
  • Bogovic J, Chen M, Carass A, Bazin P, Pham D, Resnick S, Prince J, Landman B (2010).  Multi-Modal Structural Networks: Mapping of Connectivity through Diffusion, Functional, and Structural Assessment of Intervening Pathways.  Proc Intl Soc Mag Reson Med.  18.  672.
  • Roy S, Carass A, Prince J (2010).  Synthesizing MR contrast and resolution through a patch matching technique.  Proceedings of SPIE Medical Imaging.  76230J-76230J.
  • Roy S, Carass A, Shiee N, Pham DL, Prince J (2010).  MR contrast synthesis for lesion segmentation.  Biomedical Imaging: From Nano to Macro, 2010 IEEE International Symposium on.  932-935.
  • Roy S, Carass A, Shiee N, Pham DL, Resnick S, Prince J (2010).  Longitudinal changes of white matter lesions.  Annual Meeting of the International Society of Magnetic Resonance in Medicine.
  • Wan J, Carass A, Bazin P, Bogovic J, Ying S, Prince J (2009).  Automated Cerebellum Extraction From Whole Head 3D MR Images.  Annual Meeting of the Organization for Human Brain Mapping. In Neuroimage.  47.  S153.
  • Roy S, Carass A, Bazin P, Prince J (2009).  A Rician mixture model classification algorithm for magnetic resonance images.  Biomedical Imaging: From Nano to Macro, 2009. ISBI'09. IEEE International Symposium on.  406-409.
  • Huang H, Prince J, Carass A, Landman BA, van Zijl PC, Mori S (2009).  Probabilistic Corticocortical Connectivity Maps of Human Brain based on DTI Tractography and Cortical Parcellation.  Annual Meeting of the International Society of Magnetic Resonance in Medicine.
  • Roy S, Agarwal H, Carass A, Bai Y, Pham DL, Prince J (2008).  Fuzzy c-means with variable compactness.  Biomedical Imaging: From Nano to Macro, 2008. ISBI 2008. 5th IEEE International Symposium on.  452-455.
  • Wan J, Carass A, Resnick S, Prince J (2008).  Characterizing regional gray matter thickness trends in normal aging.  Annual Meeting of the Organization for Human Brain Mapping.
  • Wan J, Carass A, Resnick SM, Prince J (2008).  Automated reliable labeling of the cortical surface.  Biomedical Imaging: From Nano to Macro, 2008. ISBI 2008. 5th IEEE International Symposium on.  440-443.
  • Bogovic JA, Carass A, Wan J, Landman BA, Prince J (2008).  Automatically identifying white matter tracts using cortical labels.  Biomedical Imaging: From Nano to Macro, 2008. ISBI 2008. 5th IEEE International Symposium on.  895-898.
  • Bogovic J, Carass A, Wan J, Landman BA, Prince J (2008).  DTI Fiber tractography reveals precentral-postcentral gyral connectivity.  Annual Meeting of the Organization for Human Brain Mapping.
  • Carass A, Wheeler MB, Cuzzocreo J, Bazin P, Bassett SS, Prince J (2007).  A joint registration and segmentation approach to skull stripping.  Biomedical Imaging: From Nano to Macro, 2007. ISBI 2007. 4th IEEE International Symposium on.  656-659.
  • Anbazhagan P, Carass A, Bazin P, Prince J (2006).  Automatic estimation of midsagittal plane and AC-PC alignment on nonrigid registration.  Biomedical Imaging: Nano to Macro, 2006. 3rd IEEE International Symposium on.  828-831.
  • Huang H, Prince J, Carass A, Landman B, van Zijl P, Mori S (2006).  Cortico-cortical connectivity revealed by DTI-based tractography.  Proc. Int'l Soc. Mag. Res. Med.
Back to top