Beer, Michael

Associate Professor
Som Biomedical EngineeringBME Profile

BRB 573
(410) 502-3688
mbeer@jhu.edu

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About

Education
  • Ph.D. 1995, Princeton University
  • Master of Arts 1991, Princeton University
  • Bachelor of Science 1989, Univ of Michigan Ann Arbor*
Experience
  • 2005 - Present:  Joint, SOM Molecular Biology and Genetics

Publications

Journal Articles
  • Kreimer A, Zeng H, Edwards MD, Guo Y, Tian K, Shin S, Welch R, Wainberg M, Mohan R, Sinnott-Armstrong NA, Li Y, Eraslan G, Amin TB, Tewhey R, Sabeti PC, Goke J, Mueller NS, Kellis M, Kundaje A, Beer MA, Keles S, Gifford DK, Yosef N (2017).  Predicting gene expression in massively parallel reporter assays: A comparative study.  Human Mutation.  38(9).
  • Beer MA (2017).  Predicting enhancer activity and variant impact using gkm-SVM.  Human Mutation.  38(9).
  • Migeon BR, Beer MA, Bjornsson HT (2017).  Embryonic loss of human females with partial trisomy 19 identifies region critical for the single active X.  PLoS ONE.  12(4).
  • Ghandi M, Mohammad-Noori M, Ghareghani N, Lee D, Garraway L, Beer MA (2016).  GkmSVM: An R package for gapped-kmer SVM.  Bioinformatics.  32(14).
  • Mo A, Luo C, Davis FP, Mukamel EA, Henry GL, Nery JR, Urich MA, Picard S, Lister R, Eddy SR, Beer MA, Ecker JR, Nathans J (2016).  Epigenomic landscapes of retinal rods and cones.  eLife.  5(MARCH2016).
  • Karnik R, Beer MA (2015).  Identification of predictive cis-regulatory elements using a discriminative objective function and a dynamic search space.  PLoS ONE.  10(10).
  • Lee D, Gorkin DU, Baker M, Strober BJ, Asoni AL, McCallion AS, Beer MA (2015).  A method to predict the impact of regulatory variants from DNA sequence.  Nature Genetics.  47(8).
  • Pervouchine DD, Djebali S, Breschi A, Davis CA, Barja PP, Dobin A, Tanzer A, Lagarde J, Zaleski C, See LH, Fastuca M, Drenkow J, Wang H, Bussotti G, Pei B, Balasubramanian S, Monlong J, Harmanci A, Gerstein M, Beer MA, Notredame C, Guigó R, Gingeras TR (2015).  Enhanced transcriptome maps from multiple mouse tissues reveal evolutionary constraint in gene expression.  Nature Communications.  6.
  • Lin S, Lin Y, Nery JR, Urich MA, Breschi A, Davis CA, Dobin A, Zaleski C, Beer MA, Chapman WC, Gingeras TR, Ecker JR, Snyder MP (2014).  Comparison of the transcriptional landscapes between human and mouse tissues.  Proceedings of the National Academy of Sciences of the United States of America.  111(48).
  • Yue F, Cheng Y, Breschi A, Vierstra J, Wu W, Ryba T, Sandstrom R, Ma Z, Davis C, Pope BD, Shen Y, Pervouchine DD, Djebali S, Thurman RE, Kaul R, Rynes E, Kirilusha A, Marinov GK, Williams BA, Trout D, Amrhein H, Fisher-Aylor K, Antoshechkin I, DeSalvo G, See L-H, Fastuca M, Drenkow J, Zaleski C, Dobin A, Prieto P, Lagarde J, Bussotti G, Tanzer A, Denas O, Li K, Bender MA, Zhang M, Byron R, Groudine MT, McCleary D, Pham L, Ye Z, Kuan S, Edsall L, Wu Y-C, Rasmussen MD, Bansal MS, Kellis M, Keller CA, Morrissey CS, Mishra T, Jain D, Dogan N, Harris RS, Cayting P, Kawli T, Boyle AP, Euskirchen G, Kundaje A, Lin S, Lin Y, Jansen C, Malladi VS, Cline MS, Erickson DT, Kirkup VM, Learned K, Sloan CA, Rosenbloom KR, De Sousa BL, Beal K, Pignatelli M, Flicek P, Lian J, Kahveci T, Lee D, Kent WJ, Santos MR, Herrero J, Notredame C, Johnson A, Vong S, Lee K, Bates D, Neri F, Diegel M, Canfield T, Sabo PJ, Wilken MS, Reh TA, Giste E, Shafer A, Kutyavin T, Haugen E, Dunn D, Reynolds AP, Neph ...Ren B (2014).  A comparative encyclopedia of DNA elements in the mouse genome.  Nature.  515(7527).
  • Ghandi M, Lee D, Mohammad-Noori M, Beer MA (2014).  Enhanced Regulatory Sequence Prediction Using Gapped k-mer Features.  PLoS Computational Biology.  10(7).
  • Pimkin M, Kossenkov AV, Mishra T, Morrissey CS, Wu W, Keller CA, Blobel GA, Lee D, Beer MA, Hardison RC, Weiss MJ (2014).  Divergent functions of hematopoietic transcription factors in lineage priming and differentiation during erythro-megakaryopoiesis.  Genome Research.  24(12).
  • Ghandi M, Mohammad-Noori M, Beer MA (2014).  Robust k-mer frequency estimation using gapped k-mers.  Journal of Mathematical Biology.  69(2).
  • Fletez-Brant C, Lee D, McCallion AS, Beer MA (2013).  kmer-SVM: a web server for identifying predictive regulatory sequence features in genomic data sets..  Nucleic acids research.  41(Web Server issue).
  • Lee D, Beer MA (2013).  Advances in computational identification and modeling of DNA regulatory elements in the human genome.  IFMBE Proceedings.  40 IFMBE.
  • Gorkin DU, Lee D, Reed X, Fletez-Brant C, Bessling SL, Loftus SK, Beer MA, Pavan WJ, McCallion AS (2012).  Integration of ChIP-seq and machine learning reveals enhancers and a predictive regulatory sequence vocabulary in melanocytes.  Genome Research.  22(11).
  • Ghandi M, Beer MA (2012).  Group normalization for genomic data.  PLoS ONE.  7(8).
  • Lee D, Karchin R, Beer MA (2011).  Discriminative prediction of mammalian enhancers from DNA sequence.  Genome Research.  21(12).
  • Amanchy R, Kandasamy K, Mathivanan S, Periaswamy B, Reddy R, Yoon WH, Joore J, Beer MA, Cope L, Pandey A (2011).  Identification of novel phosphorylation motifs through an integrative computational and experimental analysis of the human phosphoproteome.  Journal of Proteomics and Bioinformatics.  4(2).
  • Khanna H, Davis EE, Murga-Zamalloa CA, Estrada-Cuzcano A, Lopez I, Den Hollander AI, Zonneveld MN, Othman MI, Waseem N, Chakarova CF, Maubaret C, Diaz-Font A, MacDonald I, Muzny DM, Wheeler DA, Morgan M, Lewis LR, Logan CV, Tan PL, Beer MA, Inglehearn CF, Lewis RA, Jacobson SG, Bergmann C, Beales PL, Attié-Bitach T, Johnson CA, Otto EA, Bhattacharya SS, Hildebrandt F, Gibbs RA, Koenekoop RK, Swaroop A, Katsanis N (2009).  A common allele in RPGRIP1L is a modifier of retinal degeneration in ciliopathies.  Nature Genetics.  41(6).
  • Chang TC, Zeitels LR, Hwang HW, Chivukula RR, Wentzel EA, Dews M, Jung J, Gao P, Dang CV, Beer MA, Thomas-Tikhonenko A, Mendella JT (2009).  Lin-28B transactivation is necessary for Myc-mediated let-7 repression and proliferation.  Proceedings of the National Academy of Sciences of the United States of America.  106(9).
  • Yang Y, Chaerkady R, Beer MA, Mendell JT, Pandey A (2009).  Identification of miR-21 targets in breast cancer cells using a quantitative proteomic approach.  Proteomics.  9(5).
  • McGaughey DM, Vinton RM, Huynh J, Al-Saif A, Beer MA, McCallion AS (2008).  Metrics of sequence constraint overlook regulatory sequences in an exhaustive analysis at phox2b.  Genome Research.  18(2).
  • Chang TC, Wentzel EA, Kent OA, Ramachandran K, Mullendore M, Lee K, Feldmann G, Yamakuchi M, Ferlito M, Lowenstein CJ, Arking DE, Beer MA, Maitra A, Mendell JT (2007).  Transactivation of miR-34a by p53 Broadly Influences Gene Expression and Promotes Apoptosis.  Molecular Cell.  26(5).
  • Katz DJ, Beer MA, Levorse JM, Tilghman SM (2005).  Functional characterization of a novel Ku70/80 pause site at the H19/Igf2 imprinting control region.  Molecular and Cellular Biology.  25(10).
  • Beer MA, Tavazoie S (2004).  Predicting gene expression from sequence.  Cell.  117(2).
  • Pritsker M, Liu YC, Beer MA, Tavazoie S (2004).  Whole-genome discovery of transcription factor binding sites by network-level conservation.  Genome Research.  14(1).
  • Ross DW, Bravenec RV, Dorland W, Beer MA, Hammett GW, McKee GR, Fonck RJ, Murakami M, Burrell KH, Jackson GL, Staebler GM (2002).  Comparing simulation of plasma turbulence with experiment.  Physics of Plasmas.  9(1).
  • Dimits AM, Bateman G, Beer MA, Cohen BI, Dorland W, Hammett GW, Kim C, Kinsey JE, Kotschenreuther M, Kritz AH, Lao LL, Mandrekas J, Nevins WM, Parker SE, Redd AJ, Shumaker DE, Sydora R, Weiland J (2000).  Comparisons and physics basis of tokamak transport models and turbulence simulations.  Physics of Plasmas.  7(3).
  • Synakowski EJ, Beer MA, Bell RE, Burrell KH, Carreras BA, Diamond PH, Doyle EJ, Ernst D, Fonck RJ, Gohil P, Greenfield CM, Hahm TS, Hammett GW, Levinton FM, Mazzucato E, McKee G, Newman DE, Park HK, Rettig CL, Rewoldt G, Rhodes TL, Rice BW, Taylor G, Zarnstorff MC (1999).  Comparative studies of core and edge transport barrier dynamics of DIII-D and TFTR tokamak plasmas.  Nuclear Fusion.  39(Special Issu).
  • Hahm TS, Beer MA, Lin Z, Hammett GW, Lee WW, Tang WM (1999).  Shearing rate of time-dependent E×B flow.  Physics of Plasmas.  6(3).
  • Hawryluk RJ, Batha S, Blanchard W, Beer M, Bell MG, Bell RE, Berk H, Bernabei S, Bitter M, Breizman B, Bretz NL, Budny R, Bush CE, Callen J, Camp R, Cauffman S, Chang Z, Cheng CZ, Darrow DS, Dendy RO, Dorland W, Duong H, Efthimion PC, Ernst D, Fisch NJ, Fisher R, Fonck RJ, Fredrickson ED, Fu GY, Furth HP, Gorelenkov NN, Grek B, Grisham LR, Hammett GW, Hanson GR, Herrmann HW, Herrmann MC, Hill KW, Hogan J, Hosea JC, Houlberg WA, Hughes M, Hulse RA, Jassby DL, Jobes FC, Johnson DW, Kaita R, Kaye S, Kim JS, Kissick M, Krasilnikov AV, Kugel H, Kumar A, Leblanc B, Levinton FM, Ludescher C, Majeski RP, Manickam J, Mansfield DK, Mazzucato E, McChesney J, McCune DC, McGuire KM, Meade DM, Medley SS, Mika R, Mikkelsen DR, Mirnov SV, Mueller D, Nagy A, Navratil GA, Nazikian R, Okabayashi M, Park HK, Park W, Paul SF, Pearson G, Petrov MP, Phillips CK, Phillips M, Ramsey AT, Redi MH, Rewoldt G, Reznik S, Roquemore AL, Rogers J, Ruskov E, Sabbagh SA, Sasao M, Schilling G, Schivell J, Sch...Zweben SJ (1998).  Fusion plasma experiments on TFTR: A 20 year retrospective.  Physics of Plasmas.  5(5 PART 1).
  • Rewoldt G, Beer MA, Chance MS, Hahm TS, Lin Z, Tang WM (1998).  Sheared rotation effects on kinetic stability in enhanced confinement tokamak plasmas, and nonlinear dynamics of fluctuations and flows in axisymmetric plasmas.  Physics of Plasmas.  5(5 PART 1).
  • Synakowski EJ, Batha SH, Beer MA, Bell MG, Bell RE, Budny RV, Bush CE, Efthimion PC, Hammett GW, Hahm TS, LeBlanc B, Levinton B, Mazzucato E, Park H, Ramsey AT, Rewoldt G, Scott SD, Schmidt G, Tang WM, Taylor G, Zarnstorff MC (1997).  Roles of Electric Field Shear and Shafranov Shift in Sustaining High Confinement in Enhanced Reversed Shear Plasmas on the TFTR Tokamak.  Physical Review Letters.  78(15).
  • Skinner CH, Amarescu E, Ascione G, Blanchard W, Barnes CW, Batha SH, Beer M, Bell MG, Bell R, Bitter M, Bretz NL, Budny R, Bush CE, Camp R, Casey M, Collins J, Cropper M, Chang Z, Darrow DS, Duong HH, Durst R, Efthimion PC, Ernst D, Fisch N, Fonck RJ, Fredrickson E, Fu G, Furth HP, Gentile CA, Gibson M, Gilbert J, Grek B, Grisham LR, Hammett G, Hawryluk RJ, Herrmann HW, Hill KW, Hosea J, Janos A, Jassby DL, Jobes FC, Johnson DW, Johnson LC, Kamperschroer J, Kalish M, Kugel H, Langford J, Langish S, LaMarche PH, LeBlanc B, Levinton FM, Machuzak J, Majeski R, Manikam J, Mansfield DK, Mazzucato E, McGuire KM, Mika R, McKee G, Meade DM, Medley SS, Mikkelsen DR, Mynick HE, Mueller D, Nagy A, Nazikian R, Ono M, Owens DK, Park H, Paul SF, Pearson G, Petrov M, Phillips CK, Raftopoulos S, Ramsey A, Raucci R, Redi MH, Rewoldt G, Rogers J, Roquemore AL, Ruskov E, Sabbagh SA, Schilling G, Schivell JF, Schmidt GL, Scott SD, Sesnic S, Stratton BC, Strachan JD, Stevenson T, Stotler DP,...Von Goeler S (1997).  Plasma wall interaction and tritium retention in TFTR.  Journal of Nuclear Materials.  241-243.
  • Synakowski EJ, Batha SH, Beer MA, Bell MG, Bell RE, Budny RV, Bush CE, Efthimion PC, Hahm TS, Hammett GW, Leblanc B, Levinton F, Mazzucato E, Park H, Ramsey AT, Schmidt G, Rewoldt G, Scott SD, Taylor G, Zarnstorff MC (1997).  Local transport barrier formation and relaxation in reverse-shear plasmas on the Tokamak Fusion Test Reactor.  Physics of Plasmas.  4(5).
  • Strachan JD, Batha S, Beer M, Bell MG, Bell RE, Belov A, Berk H, Bernabei S, Bitter M, Breizman B, Bretz NL, Budny R, Bush CE, Callen J, Cauffman S, Chang CS, Chang Z, Cheng CZ, Darrow DS, Bendy RO, Borland W, Buong H, Efthimion PC, Ernst B, Evenson H, Fisch NJ, Fisher R, Fonck RJ, Fredrickson EB, Fu GY, Furth HP, Gorelenkov NN, Goloborod'ko VYa, Grek B, Grisham LR, Hammett GW, Hawryluk RJ, Heidbrink W, Herrmann HW, Herrmann MC, Hill KW, Hogan J, Hooper B, Hosea JC, Houlberg WA, Hughes M, Jassby BL, Jobes FC, Johnson BW, Kaita R, Kaye S, Kesner J, Kim JS, Kissick M, Krasilnikov AV, Kugel H, Kumar A, Lam NT, Lamarche P, Leblanc B, Levinton FM, Ludescher C, Machuzak J, Majeski RP, Manickam J, Mansfield BK, Mauel M, Mazzucato E, McChesney J, McCune BC, McKee G, McGuire KM, Meade BM, Medley SS, Mikkelsen BR, Mirnov SV, Mueller B, Nagayama Y, Navratil GA, Nazikian R, Okabayashi M, Osakabe M, Owens BK, Park HK, Park W, Paul SF, Petrov MP, Phillips CK, Phillips M, Phillips P, Rams...Zweben SJ (1997).  TFTR DT experiments.  Plasma Physics and Controlled Fusion.  39(12B).
  • Ottaviani M, Beer MA, Cowley SC, Horton W, Krommes JA (1997).  Unanswered questions in ion-temperature-gradient-driven turbulence.  Physics Report.  283(1-4).
  • Bell MG, Batha S, Beer M, Bell RE, Belov A, Berk H, Bernabei S, Bitter M, Breizman B, Bretz NL, Budny R, Bush CE, Callen J, Cauffman S, Chang CS, Chang Z, Cheng CZ, Darrow DS, Dendy RO, Dorland W, Duong H, Efthimion PC, Ernst D, Evenson H, Fisch NJ, Fisher R, Fonck RJ, Fredrickson ED, fu GY, Furth HP, Gorelenkov NN, Goloborod’ko VY, Grek B, Grisham LR, Hammett GW, Hawryluk RJ, Heidbrink W, Herrmann HW, Herrmann MC, Hill KW, Hogan J, Hooper B, Hosea JC, Houlberg WA, Hughes M, Jassby DL, Jobes FC, Johnson DW, Kaita R, Kaye S, Kesner J, Kim JS, Kissick M, Krasilnikov AV, Kugel H, Kumar A, Lam NT, Lamarche P, Leblanc B, Levinton FM, Ludescher C, Machuzak J, Majeski RP, Manickam J, Mansfield DK, Mauel M, Mazzucato E, Mcchesney J, Mccune DC, Mckee G, Mcguire KM, Meade DM, Medley SS, Mikkelsen DR, Mirnov SV, Mueller D, Nagayama Y, Navratil GA, Nazikian R, Okabayashi M, Osakabe M, Owens DK, Park HK, Park W, Paul SF, Petrov MP, Phillips CK, Phillips M, Phillips P, Ramsey AT, Rice B,...Zweben SJ (1997).  Deuterium–tritium plasmas in novel regimes in the Tokamak Fusion Test Reactor.  Physics of Plasmas.  4(5).
  • Beer MA, Hammett GW, Rewoldt G, Synakowski EJ, Zarnstorff MC, Dorland W (1997).  Gyrofluid simulations of turbulence suppression in reversed-shear experiments on the Tokamak Fusion Test Reactor.  Physics of Plasmas.  4(5).
  • Hawryluk RJ, Barnes CW, Batha S, Beer M, Bell MG, Bell R, Berk H, Bitter M, Bretz NL, Budny R, Bush CE, Cauffman S, Chang CS, Chang Z, Cheng CZ, et al (1996).  Review of D-T results from TFTR.  Fusion Technology.  30(3).
  • Kerbel GD, Pierce T, Milovich JL, Shumaker DE, Verlo A, Waltz RE, Hammett GW, Beer MA, Dorland B (1996).  Interactive scientific exploration of gyrofluid Tokamak turbulence.  International Journal of High Performance Computing Applications.  10(2-3).
  • Beer MA, Hammett GW (1996).  Bounce averaged trapped electron fluid equations for plasma turbulence.  Physics of Plasmas.  3(11).
  • Beer MA, Hammett GW (1996).  Toroidal gyrofluid equations for simulations of tokamak turbulence.  Physics of Plasmas.  3(11).
  • Mazzucato E, Batha SH, Beer M, Bell M, Bell RE, Budny RV, Bush C, Hahm TS, Hammett GW, Levinton FM, Nazikian R, Park H, Rewoldt G, Schmidt GL, Synakowski EJ, Tang WM, Taylor G, Zarnstorff MC (1996).  Turbulent fluctuations in tftr configurations with reversed magnetic shear.  Physical Review Letters.  77(15).
  • Bell MG, McGuire KM, Arunasalam V, Barnes CW, Batha SH, Bateman G, Beer MA, Bell RE, Bitter M, Bretz NI, Budny RV, Bush CE, Cauffman SR, Chang Z, Chang C-S, Cheng CZ, Darrow DS, Dendy RO, Dorland W, Duong HH, Durst RD, Efthimion PC, Ernst D, Evenson H, Fisch NJ, Fisher RK, Fonck RJ, Fredrickson ED, Fu GY, Furth HP, Gorelenkov NN, Grek B, Grisham LR, Hammett GW, Hanson GR, Hawryluk RJ, Heidbrink WW, Herrmann HW, Hill KW, Hosea JC, Hsuan H, Hughes MH, Hulse RA, Janos AC, Jassby DI, Jobes FC, Johnson DW, Johnson LC, Kesner J, Kugel HW, Lam NT, Leblanc B, Levinton FM, MacHuzak J, Majeski R, Mansfield DK, Mazzucato E, Mauel ME, McChesney JM, McCune DC, McKee G, Meade DM, Medley SS, Mikkelsen DR, Mirnov SV, Mueller D, Navratil GA, Nazikian R, Owens DK, Park HK, Park W, Parks PB, Paul SF, Petrov MP, Phillips CK, Phillips MW, Pitcher CS, Ramsey AT, Redi MH, Rewoldt G, Roberts DR, Rogers JH, Ruskov E, Sabbagh SA, Sasao M, Schilling G, Schivell JF, Schmidt GI, Scott SD, Semenov I, Sesn...Et. Al. (1995).  Overview of DT results from TFTR.  Nuclear Fusion.  35(12).
  • Johnson DW, Arunasalam V, Barnes CW, Batha SH, Bateman G, Beer M, Bell MG, Bell R, Bitter M, Bretz NL, Budny R, Bush CE, Cauffman S, Chang CS, Chang Z, Cheng CZ, Darrow DS, Dendy R, Dorland W, Duong HH, Durst R, Efthimion PC, Ernst D, Evenson H, Fisch N, Fisher R, Fonck RJ, Fredrickson E, Fu GY, Fujita T, Furth HP, Gorelenkov N, Grek B, Grisham LR, Hammett G, Hawryluk RJ, Heidbrink W, Herrmann HW, Hill KW, Hosea J, Hsuan H, Hughes M, Janos A, Jassby DL, Jobes FC, Johnson LC, Kamperschroer J, Kesner J, Kotschenreuther M, Kugel H, Lamarche PH, Leblanc B, Levinton FM, MacHuzak J, Majeski R, Mansfield DK, Marmar ES, Mazzucato E, Mauel M, McChesney J, McGuire KM, McKee G, Meade DM, Medley SS, Mikkelsen DR, Mirnov SV, Mueller D, Nazikian R, Osakabe M, Owens DK, Park H, Park W, Parks P, Paul SF, Petrov M, Phillips CK, Phillips M, Qualls AL, Ramsey A, Redi MH, Rewoldt G, Roberts D, Rogers J, Roquemore AL, Ruskov E, Sabbagh SA, Sasao M, Schilling G, Schivell J, Schmidt GL, Scott SD,...Zweben SJ (1995).  Recent D-T results on TFTR.  Plasma Physics and Controlled Fusion.  37(11A).
  • Kotschenreuther M, Dorland W, Beer MA, Hammett GW (1995).  Quantitative predictions of tokamak energy confinement from first-principles simulations with kinetic effects.  Physics of Plasmas.  2(6).
  • McGuire KM, Adler H, Alling P, Ancher C, Anderson H, Anderson JL, Anderson JW, Arunasalam V, Ascione G, Ashcroft D, Barnes CW, Barnes G, Batha S, Bateman G, Beer M, Bell MG, Bell R, Bitter M, Blanchard W, Bretz NL, Brunkhorst C, Budny R, Bush CE, Camp R, Caorlin M, Carnevale H, Cauffman S, Chang Z, Chang CS, Cheng CZ, Chrzanowski J, Collins J, Coward G, Cropper M, Darrow DS, Daugert R, DeLooper J, Dendy R, Dorland W, Dudek L, Duong H, Durst R, Efthimion PC, Ernst D, Evenson H, Fisch N, Fisher R, Fonck RJ, Fredd E, Fredrickson E, Fromm N, Fu GY, Fujita T, Furth HP, Garzotto V, Gentile C, Gilbert J, Gioia J, Gorelenkov N, Grek B, Grisham LR, Hammett G, Hanson GR, Hawryluk RJ, Heidbrink W, Herrmann HW, Hill KW, Hosea J, Hsuan H, Hughes M, Hulse R, Janos A, Jassby DL, Jobes FC, Johnson DW, Johnson LC, Kalish M, Kamperschroer J, Kesner J, Kugel H, Labik G, Lam NT, LaMarche PH, Lawson E, LeBlanc B, Levine J, Levinton FM, Loesser D, Long D, Loughlin MJ, Machuzak J, Majeski R, Mans...Zweben SJ (1995).  Review of deuterium-tritium results from the Tokamak Fusion Test Reactor.  Physics of Plasmas.  2(6).
  • Beer MA, Cowley SC, Hammett GW (1995).  Field-aligned coordinates for nonlinear simulations of tokamak turbulence.  Physics of Plasmas.  2(7).
  • Hawryluk RJ, Adler H, Alling P, Ancher C, Anderson H, Anderson JL, Anderson JW, Arunasalam V, Ascione G, Aschroft D, Barnes CW, Barnes G, Batchelor DB, Bateman G, Batha S, Baylor LA, Beer M, Bell MG, Biglow TS, Bitter M, Blanchard W, Bonoli P, Bretz NL, Brunkhorst C, Budny R, Burgess T, Bush H, Bush CE, Camp R, Caorlin M, Carnevale H, Chang Z, Chen L, Cheng CZ, Chrzanowski J, Collazo I, Collins J, Coward G, Cowley S, Cropper M, Darrow DS, Daugert R, DeLooper J, Duong H, Dudek L, Durst R, Efthimion PC, Ernst D, Faunce J, Fonck RJ, Fredd E, Fredrickson E, Fromm N, Fu GY, Furth HP, Garzotto V, Gentile C, Gettelfinger G, Gilbert J, Gioia J, Goldfinger RC, Golian T, Gorelenkov N, Gouge MJ, Grek B, Grisham LR, Hammett G, Hanson GR, Heidbrink W, Hermann HW, Hill KW, Hirshman S, Hoffman DJ, Hosea J, Hulse RA, Hsuan H, Jaeger EF, Janos A, Jassby DL, Jobes FC, Johnson DW, Johnson LC, Kamperschroer J, Kesner J, Kugel H, Kwon S, Labik G, Lam NT, LaMarche PH, Laughlin MJ, Lawson E, LeBl...Zweben SJ (1994).  Preparations for deuterium-tritium experiments on the Tokamak Fusion Test Reactor.  Physics of Plasmas.  1(5).
  • Parker SE, Dorland W, Santoro RA, Beer MA, Liu QP, Lee WW, Hammett GW (1994).  Comparisons of gyrofluid and gyrokinetic simulations.  Physics of Plasmas.  1(5).
  • Hammett GW, Beer MA, Dorland W, Cowley SC, Smith SA (1993).  Developments in the gyrofluid approach to Tokamak turbulence simulations.  Plasma Physics and Controlled Fusion.  35(8).
  • Hawryluk RJ, Mueller D, Hosea J, Barnes CW, Beer M, Bell MG, Bell R, Biglari H, Bitter M, Boivin R, Bretz NL, Budny R, Bush CE, Chen L, Cheng CZ, Cowley S (1992).  Status and plans for TFTR.  Fusion Technology.  21(3 pt 2A).
  • Beer MA, Hahm TS (1992).  Atomic physics effects on dissipative toroidal drift wave stability.  Physics of Fluids B.  4(8).
  • Hawryluk RJ, Arunasalam V, Barnes CW, Beer M, Bell M, Bell R, Biglari H, Bitter M, Boivin R, Bretz NL, Budny R, Bush CE, Cheng CZ, Chu TK, Cohen SA, Cowley S, Efhimion PC, Fonck RJ, Fredrickson E, Furth HP, Goldston RJ, Greene G, Grek B, Grisham LR, Hammett G, Heidbrink W, Hill KW, Hosea J, Hulse RA, Hsuan H, Janos A, Jassby D, Jobes FC, Johnson DW, Johnson LC, Kesner J, Kieras-Phillips C, Kilpatrick SJ, Kugel H, La Marche PH, LeBlanc B, Manos DM, Mansfield DK, Marmar ES, Mazzucato E, McCarthy MP, Mauel M, McCune DC, McGuire KM, Meade DM, Medley SS, Mikkelsen DR, Monticello D, Motley R, Mueller D, Nagayama Y, Navratil GA, Nazikian R, Owens DK, Park H, Park W, Paul S, Perkins F, Pitcher S, Ramsey AT, Redi MH, Rewoldt G, Roberts D, Roquemore AL, Rutherford PH, Sabbagh S, Schilling G, Schivell J, Schmidt GL, Scott SD, Snipes J, Stevens J, Stratton BC, Stodiek W, Synakowski E, Takase Y, Tang W, Taylor G, Terry J, Timberlake JR, Towner HH, Ulrickson M, Von Goeler S, Wieland R, W...Zweben SJ (1991).  Overview of TFTR transport studies.  Plasma Physics and Controlled Fusion.  33(13).
  • Hosea JC, Beer M, Bell MG, Bitter M, Boivin R, Bretz NL, Bush CE, Cavallo A, Chu TK, Cohen SA, Colestock PL, Dylla HF, Efthimion PC, Fredrickson ED, Goldston RJ, Greene GJ (1991).  ICRF heating in several regimes on TFTR.
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