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Ardekani, Siamak

Assistant Research Professor
Biomedical Engineering

Clark Hall 320A
(410) 516-5424
sardekani@jhu.edu

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About

Education
  • Ph.D. 2006, Univ of California Los Angeles
  • Ph.D. 2003, Univ of California Los Angeles
  • Master of Science 2000, Drexel University
  • Other 1993, Shiraz University of Medical Sciences, Shiraz, Iran
Experience
  • 2016 - Present:  Lecturer, WSE Engineering for Professionals (EP)
  • 2016 - Present:  Joint, SOM Medicine

Publications

Journal Articles
  • Lee BC, Tward DJ, Wei J, Tipre D, Weiss RG, Miller MI, Ardekani S (2019).  Diffeomorphic Upsampling of Serially Acquired Sparse 2D Cross-Sections in Cardiac MRI.  Proceedings of the Annual International Conference of the IEEE Engineering in Medicine and Biology Society, EMBS.  4491-4495.
  • Ardekani S, Jain S, Sanzi A, Corona-Villalobos CP, Abraham TP, Abraham MR, Zimmerman SL, Wu KC, Winslow RL, Miller MI, Younes L (2016).  Shape analysis of hypertrophic and hypertensive heart disease using MRI-based 3D surface models of left ventricular geometry.  Medical Image Analysis.  29.  12-23.
  • Ardekani S, Gunter G, Jain S, Weiss RG, Miller M, Younes L (2014).  Estimating dense cardiac 3D motion using sparse 2D tagged MRI cross-sections..  Conference proceedings : ... Annual International Conference of the IEEE Engineering in Medicine and Biology Society. IEEE Engineering in Medicine and Biology Society. Annual Conference.  2014.  5101-4.
  • Horská A, Nidecker A, Intrapiromkul J, Tannazi F, Ardekani S, Brant LJ, Wharam, Jr M, Mahone EM (2014).  Diffusion tensor imaging of deep gray matter in children treated for brain malignancies..  Child's nervous system : ChNS : official journal of the International Society for Pediatric Neurosurgery.  30(4).  631-8.
  • Horská A, Nidecker A, Intrapiromkul J, Tannazi F, Ardekani S, Brant LJ, Wharam M, Mahone EM (2014).  Diffusion tensor imaging of deep gray matter in children treated for brain malignancies.  Child's Nervous System.  30(4).  631-638.
  • Ardekani S, Gunter G, Jain S, Weiss RG, Miller MI, Younes L (2014).  Estimating dense cardiac 3D motion using sparse 2D tagged MRI cross-sections.  2014 36th Annual International Conference of the IEEE Engineering in Medicine and Biology Society, EMBC 2014.  5101-5104.
  • Steinert-Threlkeld S, Ardekani S, Mejino JLV, Detwiler LT, Brinkley JF, Halle M, Kikinis R, Winslow RL, Miller MI, Ratnanather JT (2012).  Ontological labels for automated location of anatomical shape differences.  Journal of Biomedical Informatics.  45(3).  522-527.
  • Ardekani S, Jain A, Jain S, Abraham TP, Abraham MR, Zimmerman S, Winslow RL, Miller MI, Younes L (2012).  Matching sparse sets of cardiac image cross-sections using large deformation diffeomorphic metric mapping algorithm.  Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics).  7085 LNCS.  234-243.
  • Steinert-Threlkeld S, Ardekani S, Mejinoz JLV, Detwilerz LT, Brinkleyz JF, Halle M, Kikinis R, Winslowy RL, Miller MI, Ratnanather JT (2011).  Ontological labels for automated location of left ventricular remodeling.  Proceedings - 5th IEEE International Conference on Semantic Computing, ICSC 2011.  572-573.
  • Tameem HZ, Ardekani S, Seeger L, Thompson P, Sinha US (2011).  Initial results on development and application of statistical atlas of femoral cartilage in osteoarthritis to determine sex differences in structure: data from the Osteoarthritis Initiative..  Journal of magnetic resonance imaging : JMRI.  34(2).  372-83.
  • Tameem HZ, Ardekani S, Seeger L, Thompson P, Sinha US (2011).  Initial results on development and application of statistical atlas of femoral cartilage in osteoarthritis to determine sex differences in structure: Data from the osteoarthritis initiative.  Journal of Magnetic Resonance Imaging.  34(2).  372-383.
  • Ardekani S, Weiss RG, Lardo AC, George RT, Lima JAC, Wu KC, Miller MI, Winslow RL, Younes L (2009).  Cardiac motion analysis in ischemic and non-ischemic cardiomyopathy using parallel transport.  Proceedings - 2009 IEEE International Symposium on Biomedical Imaging: From Nano to Macro, ISBI 2009.  899-902.
  • Ardekani S, Weiss RG, Lardo AC, George RT, Lima JA, Wu KC, Miller M, Winslow RL, Younes L (2009).  Computational method for identifying and quantifying shape features of human left ventricular remodeling..  Annals of biomedical engineering.  37(6).  1043-54.
  • Ardekani S, Weiss RG, Lardo AC, Miller M, Winslow RL, Younes L (2009).  Cardiac Motion Analysis in Ischemic and Non-Ischemic Cardiomyopathy Using Parallel Transport..  Proceedings / IEEE International Symposium on Biomedical Imaging: from nano to macro. IEEE International Symposium on Biomedical Imaging.  899.
  • Ardekani S, Weiss RG, Lardo AC, George RT, Lima JAC, Wu KC, Miller MI, Winslow RL, Younes L (2009).  Computational Method for Identifying and Quantifying Shape Features of Human Left Ventricular Remodeling.  Annals of Biomedical Engineering.  37(6).  1043-1054.
  • Ardekani S, Kumar A, Bartzokis G, Sinha U (2007).  Exploratory voxel-based analysis of diffusion indices and hemispheric asymmetry in normal aging.  Magnetic Resonance Imaging.  25(2).  154-167.
  • Ardekani S, Kumar A, Bartzokis G, Sinha U (2007).  Exploratory voxel-based analysis of diffusion indices and hemispheric asymmetry in normal aging..  Magnetic resonance imaging.  25(2).  154-67.
  • Bui AA, Morioka C, Dionisio JD, Johnson DB, Sinha U, Ardekani S, Taira RK, Aberle DR, El-Saden S, Kangarloo H (2007).  OpenSourcePACS: an extensible infrastructure for medical image management..  IEEE transactions on information technology in biomedicine : a publication of the IEEE Engineering in Medicine and Biology Society.  11(1).  94-109.
  • Bui AAT, Morioka C, Dionisio JDN, Johnson DB, Sinha U, Ardekani S, Taira RT, Aberle DR, El-Saden SE, Kangarloo H (2007).  OpenSourcePACS: An extensible infrastructure for medical image management.  IEEE Transactions on Information Technology in Biomedicine.  11(1).  94-109.
  • Ardekani S, Sinha U (2006).  Statistical representation of mean diffusivity and fractional anisotropy brain maps of normal subjects..  Journal of magnetic resonance imaging : JMRI.  24(6).  1243-51.
  • Ardekani S, Sinha U (2006).  Statistical representation of mean diffusivity and fractional anisotropy brain maps of normal subjects.  Journal of Magnetic Resonance Imaging.  24(6).  1243-1251.
  • Ardekani S, Selva L, Sayre J, Sinha U (2006).  Quantitative metrics for evaluating parallel acquisition techniques in diffusion tensor imaging at 3 Tesla.  Investigative Radiology.  41(11).  806-814.
  • Ardekani S, Selva L, Sayre J, Sinha U (2006).  Quantitative metrics for evaluating parallel acquisition techniques in diffusion tensor imaging at 3 Tesla..  Investigative radiology.  41(11).  806-14.
  • Ardekani S, Sinha U (2005).  Geometric distortion correction of high-resolution 3 T diffusion tensor brain images.  Magnetic Resonance in Medicine.  54(5).  1163-1171.
  • Ardekani S, Sinha U (2005).  Geometric distortion correction of high-resolution 3 T diffusion tensor brain images..  Magnetic resonance in medicine : official journal of the Society of Magnetic Resonance in Medicine / Society of Magnetic Resonance in Medicine.  54(5).  1163-71.
  • Ardekani S, Sinha U (2004).  Quantitative assessment of parallel acquisition techniques in diffusion tensor imaging at 3.0 tesla.  Annual International Conference of the IEEE Engineering in Medicine and Biology - Proceedings.  26 II.  1072-1075.
  • Sinha U, Ardekani S (2004).  Parametric brain MR atlases: standardization for imaging informatics..  Studies in health technology and informatics.  107(Pt 2).  1374-8.
  • Sinha U, Ardekani S (2004).  Parametric brain MR atlases: standardization for imaging informatics..  Medinfo. MEDINFO.  11(Pt 2).  1374-1378.
  • Sinha U, El-Saden S, Duckwiler G, Thompson L, Ardekani S, Kangarloo H (2003).  A customizable MR brain imaging atlas of structure and function for decision support..  AMIA ... Annual Symposium proceedings / AMIA Symposium. AMIA Symposium.  604-608.
  • Ardekani S, Kangarloo H, Sinha U (2002).  Region based fuzzy clustering for automated brain segmentation.  Annual International Conference of the IEEE Engineering in Medicine and Biology - Proceedings.  2.  1041-1042.
Book Chapters
  • Ardekani S, Jain A, Jain S, Abraham TP, Abraham MR, Zimmerman S, Winslow RL, Miller M, Younes L (2012).  Matching sparse sets of cardiac image cross-sections using large deformation diffeomorphic metric mapping algorithm.  Statistical Atlases and Computational Models of the Heart. Imaging and Modelling Challenges.  Springer Berlin Heidelberg.  234-243.
  • Li J, Ardekani S, Mattingly S (2011).  Urban sustainability: The case of the transportation system in big cities.  China's Economy in the Post-WTO Environment: Stock Markets, FDI and Challenges of Sustainability.  221-242.
Conference Proceedings
  • Steinert-Threlkeld S, Ardekani S, Mejino JL, Detwiler LT, Brinkley JF, Halle M, Kikinis R, Winslow RL, Miller M, Ratnanather J  Ontological Labels for Automated Location of Left Ventricular Remodeling.  Semantic Computing (ICSC), 2011 Fifth IEEE International Conference on.  572-573.
  • Steinert-Threlkeld S, Ardekani S, Mejino J, Detwiler L, Brinkley J, Halle M, Kikinis R, Winslow R, Miller M, Ratnanather J  Ontological Labels for Automated Location of Left Ventricular Remodeling.  Fifth IEEE International Conference on Semantic Computing.
  • Winslow R, Saltz J, Foster I, Carr J, Ge Y, Miller M, Younes L, Geman D, Granite S, Kurc T, Post A, Madduri R, Ratnanather T, Larkin J, Ardekani S, Brown T, Kolasny A, Reynolds K, Shipway M  The CardioVascular Research Grid (CVRG) Project.  AMIA.  77-81.
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